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Spam1 sperm adhesion molecule 1 [ Mus musculus (house mouse) ]

Gene ID: 20690, updated on 12-May-2024

Summary

Official Symbol
Spam1provided by MGI
Official Full Name
sperm adhesion molecule 1provided by MGI
Primary source
MGI:MGI:109335
See related
Ensembl:ENSMUSG00000029682 AllianceGenome:MGI:109335
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ph-20
Summary
Enables hyalurononglucosaminidase activity. Acts upstream of or within single fertilization. Located in acrosomal vesicle; external side of plasma membrane; and membrane raft. Orthologous to human SPAM1 (sperm adhesion molecule 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 9.7) See more
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Genomic context

Location:
6 A3.1; 6 11.28 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (24791187..24801047)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (24791188..24801048)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene hyaluronoglucosaminidase 4 Neighboring gene predicted gene, 38776 Neighboring gene STARR-seq mESC enhancer starr_15360 Neighboring gene STARR-seq mESC enhancer starr_15361 Neighboring gene sperm adhesion molecule 1 pseudogene Neighboring gene hyaluronoglucosaminidase 5

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 
  • Targeted (1)  1 citation

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables hyalurononglucosaminidase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables hyalurononglucosaminidase activity IDA
Inferred from Direct Assay
more info
PubMed 
enables hyalurononglucosaminidase activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
enables hydrolase activity, acting on glycosyl bonds IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within cell adhesion IEA
Inferred from Electronic Annotation
more info
 
involved_in fusion of sperm to egg plasma membrane involved in single fertilization IEA
Inferred from Electronic Annotation
more info
 
involved_in hyaluronan catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within metabolic process IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within single fertilization IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
is_active_in acrosomal vesicle IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in acrosomal vesicle IDA
Inferred from Direct Assay
more info
PubMed 
located_in external side of plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane raft IDA
Inferred from Direct Assay
more info
PubMed 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in side of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
hyaluronidase PH-20
Names
hyal-PH20
hyaluronoglucosaminidase PH-20
sperm surface protein PH-20
NP_001073344.1
NP_033267.2
XP_006505088.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001079875.2NP_001073344.1  hyaluronidase PH-20 precursor

    See identical proteins and their annotated locations for NP_001073344.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    AK005638, AY920282
    Consensus CDS
    CCDS19947.1
    UniProtKB/Swiss-Prot
    P48794, Q7TSD6, Q812F4, Q9DAQ1
    UniProtKB/TrEMBL
    Q5D1J0
    Related
    ENSMUSP00000143944.2, ENSMUST00000202331.4
    Conserved Domains (1) summary
    pfam01630
    Location:42369
    Glyco_hydro_56; Hyaluronidase
  2. NM_009241.3NP_033267.2  hyaluronidase PH-20 precursor

    See identical proteins and their annotated locations for NP_033267.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    AK005638, AY920282
    Consensus CDS
    CCDS19947.1
    UniProtKB/Swiss-Prot
    P48794, Q7TSD6, Q812F4, Q9DAQ1
    UniProtKB/TrEMBL
    Q5D1J0
    Related
    ENSMUSP00000143970.2, ENSMUST00000202569.4
    Conserved Domains (1) summary
    pfam01630
    Location:42369
    Glyco_hydro_56; Hyaluronidase

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    24791187..24801047
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006505025.3XP_006505088.1  hyaluronidase PH-20 isoform X1

    See identical proteins and their annotated locations for XP_006505088.1

    UniProtKB/Swiss-Prot
    P48794, Q7TSD6, Q812F4, Q9DAQ1
    UniProtKB/TrEMBL
    Q5D1J0
    Related
    ENSMUSP00000031693.3, ENSMUST00000031693.3
    Conserved Domains (1) summary
    pfam01630
    Location:42369
    Glyco_hydro_56; Hyaluronidase