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W06E11.1 RNB domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 189252, updated on 11-Apr-2024

Summary

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Gene symbol
W06E11.1
Gene description
RNB domain-containing protein
Primary source
WormBase:WBGene00021061
Locus tag
CELE_W06E11.1
See related
AllianceGenome:WB:WBGene00021061
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be involved in transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase III complex. Orthologous to human POLR3E (RNA polymerase III subunit E). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
chromosome: III
Exon count:
5
Sequence:
Chromosome: III; NC_003281.10 (642059..646343)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Golgin subfamily A member 7/ERF4 domain-containing protein Neighboring gene Major sperm protein Neighboring gene Protein orai Neighboring gene BRICHOS domain-containing protein;BRICHOS domain-containing protein C09F5.1 Neighboring gene Putative zinc finger protein C09F5.3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
involved_in tRNA transcription by RNA polymerase III IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of RNA polymerase III complex IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
RNB domain-containing protein
NP_497229.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    642059..646343
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_064828.2 → NP_497229.1  RNB domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_497229.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q23206
    Conserved Domains (1) summary
    pfam04801
    Location:34 → 470
    Sin_N; Sin-like protein conserved region
Nucleotide Protein
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