Pcnt pericentrin (kendrin) [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Pcntprovided by MGI
Official Full Name: pericentrin (kendrin)provided by MGI
Primary source: MGI:MGI:102722
See related: Ensembl:ENSMUSG00000001151 AllianceGenome:MGI:102722
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: KEN; Pcnt2; kendrin; m239Asp; m275Asp
Summary: Predicted to enable calmodulin binding activity and molecular adaptor activity. Acts upstream of or within several processes, including animal organ development; mitotic spindle organization; and neuron migration. Located in several cellular components, including cis-Golgi network; intercellular bridge; and microtubule organizing center. Is expressed in several structures, including central nervous system; early conceptus; genitourinary system; respiratory system; and sensory organ. Used to study microcephalic osteodysplastic primordial dwarfism type II. Human ortholog(s) of this gene implicated in microcephalic osteodysplastic primordial dwarfism type II. Orthologous to human PCNT (pericentrin). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Ubiquitous expression in testis adult (RPKM 7.7), lung adult (RPKM 6.9) and 28 other tissues See more
Orthologs: human all
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Genomic context

Location:: 10 C1; 10 38.8 cM

Exon count:: 44

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	10	NC_000076.7 (76187098..76279988, complement)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	10	NC_000076.6 (76351254..76442912, complement)

Chromosome 10 - NC_000076.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pericentrin deficiency in smooth muscle cells augments atherosclerosis through HSF1-driven cholesterol biosynthesis and PERK activation.
Title: Pericentrin deficiency in smooth muscle cells augments atherosclerosis through HSF1-driven cholesterol biosynthesis and PERK activation.
CRISPR/Cas9-mediated knockout of Syne-2 in cell culture led to an overexpression and mislocalization of Pcnt and to ciliogenesis defects. This suggests that the Pcnt-Syne-2 complex is important for ciliogenesis and outer segment formation during retinal development and plays a role in nuclear migration.
Title: Functional analyses of Pericentrin and Syne-2 interaction in ciliogenesis.
experiments demonstrate a role for Pericentrin in modulating Piezo2 activity and membrane expression in somatosensory neurons
Title: Native Piezo2 Interactomics Identifies Pericentrin as a Novel Regulator of Piezo2 in Somatosensory Neurons.
Meiotic division is highly error-prone in the absence of Pcnt and disrupted acentriolar microtubule-organizing centers.
Title: Error-prone meiotic division and subfertility in mice with oocyte-conditional knockdown of pericentrin.
Pericentrin is a key functional component of the unique acentriolar MTOCs of mouse oocytes, and plays an important role in regulating meiotic spindle assembly and/or stability.
Title: Depletion of pericentrin in mouse oocytes disrupts microtubule organizing center function and meiotic spindle organization.
The mouse Pcnt(-/-) phenotype was associated with misdirected ventricular septal growth in the heart, decreased proliferative symmetric divisions in brain neural progenitors, and increased misoriented divisions in fibroblasts.
Title: A unique set of centrosome proteins requires pericentrin for spindle-pole localization and spindle orientation.
Findings suggest distinct functional roles of several Pcnt variants in different ciliated tissues and sensory neurons, like the olfactory epithelium and the retina of the mouse
Title: The centrosomal protein pericentrin identified at the basal body complex of the connecting cilium in mouse photoreceptors.
A mutation in the pericentrin gene causes abnormal interneuron migration to the olfactory bulb in mice
Title: A mutation in the pericentrin gene causes abnormal interneuron migration to the olfactory bulb in mice.
pericentrin is essential for the assembly of chemosensory cilia of olfactory receptor neurons, but it is not globally required for cilia formation in mammals.
Title: Pericentrin, a centrosomal protein related to microcephalic primordial dwarfism, is required for olfactory cilia assembly in mice.
pPKCdelta(Thr505) interacts with MTOC-associated proteins pericentrin and gamma-tubulin, and plays a role in meiotic spindle organization in oocytes
Title: Protein kinase C delta (PKCdelta) interacts with microtubule organizing center (MTOC)-associated proteins and participates in meiotic spindle organization.

Submit: New GeneRIF Correction See all GeneRIFs (13)

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Gene trapped (1)
Targeted (1)
Chemically induced (ENU) (2) 1 citation
Endonuclease-mediated (6)

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

Pcnt2 (e-PCR), detects polymorphism
- UniSTS:259124

AW476095 (e-PCR)
- UniSTS:180063

C86676 (e-PCR)
- UniSTS:208568

D10Jhu19 (e-PCR), detects polymorphism
- UniSTS:141502

D10Jhu63 (e-PCR), detects polymorphism
- UniSTS:158718

Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables calmodulin binding	IEA Inferred from Electronic Annotation more info
enables molecular adaptor activity	IEA Inferred from Electronic Annotation more info
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within brain morphogenesis	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within camera-type eye development	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within cerebellar cortex morphogenesis	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within cilium assembly	ISO Inferred from Sequence Orthology more info
acts_upstream_of_or_within embryonic brain development	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within embryonic heart tube development	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within head development	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within in utero embryonic development	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within kidney development	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within limb morphogenesis	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in microtubule cytoskeleton organization	ISO Inferred from Sequence Orthology more info
acts_upstream_of_or_within mitotic spindle organization	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in mitotic spindle organization	ISO Inferred from Sequence Orthology more info
acts_upstream_of_or_within multicellular organism growth	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within negative regulation of apoptotic process	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within neural precursor cell proliferation	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within neuron migration	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within olfactory bulb development	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in positive regulation of intracellular protein transport	ISO Inferred from Sequence Orthology more info
involved_in signal transduction	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within spindle organization	IDA Inferred from Direct Assay more info	PubMed
acts_upstream_of_or_within vasculature development	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in centriolar satellite	ISO Inferred from Sequence Orthology more info
located_in centriole	IDA Inferred from Direct Assay more info	PubMed
located_in centriole	ISO Inferred from Sequence Orthology more info	PubMed
located_in centrosome	IDA Inferred from Direct Assay more info	PubMed
located_in centrosome	ISO Inferred from Sequence Orthology more info	PubMed
located_in ciliary basal body	IDA Inferred from Direct Assay more info	PubMed
located_in cilium	TAS Traceable Author Statement more info
located_in cis-Golgi network	IDA Inferred from Direct Assay more info	PubMed
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in cytoskeleton	IEA Inferred from Electronic Annotation more info
located_in cytosol	ISO Inferred from Sequence Orthology more info
located_in cytosol	TAS Traceable Author Statement more info
located_in intercellular bridge	IDA Inferred from Direct Assay more info	PubMed
located_in microtubule	IEA Inferred from Electronic Annotation more info
located_in microtubule organizing center	IDA Inferred from Direct Assay more info	PubMed
located_in motile cilium	IDA Inferred from Direct Assay more info	PubMed
located_in pericentriolar material	IDA Inferred from Direct Assay more info	PubMed

General protein information

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Preferred Names: pericentrin

Names: pericentrin 2; pericentrin-250; pericentrin-360

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001282992.2 → NP_001269921.1 pericentrin isoform b

Status: VALIDATED

Description

Transcript Variant: This variant (2) has an alternate splice site in the coding region, but maintains the reading frame, compared to variant 1. The resulting isoform (b) lacks an internal segment, compared to isoform a.

Source sequence(s)

AC141477, AC158618

Consensus CDS

CCDS88027.1

UniProtKB/Swiss-Prot

A0JBT0, A0JBT1, P48725

UniProtKB/TrEMBL

A0A1W2P737

Related

ENSMUSP00000151534.2, ENSMUST00000217838.2

Conserved Domains (6) summary

COG1196
Location:475 → 1375

Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

COG5281
Location:305 → 577

COG5281; Phage-related minor tail protein [Mobilome: prophages, transposons]

pfam09455
Location:1050 → 1214

Cas_DxTHG; CRISPR-associated (Cas) DxTHG family

pfam10495
Location:2701 → 2779

PACT_coil_coil; Pericentrin-AKAP-450 domain of centrosomal targeting protein

pfam12474
Location:154 → 308

PKK; Polo kinase kinase

pfam15290
Location:1413 → 1479

Syntaphilin; Golgi-localized syntaxin-1-binding clamp
NM_001428741.1 → NP_001415670.1 pericentrin isoform c

Status: VALIDATED

Source sequence(s)

AC141477, AC158618
NM_001428742.1 → NP_001415671.1 pericentrin isoform d

Status: VALIDATED

Source sequence(s)

AC141477
NM_008787.4 → NP_032813.3 pericentrin isoform a

See identical proteins and their annotated locations for NP_032813.3

Status: VALIDATED

Description

Transcript Variant: This variant (1) encodes the longer isoform (a).

Source sequence(s)

AC141477, AC158618

Consensus CDS

CCDS23944.1

UniProtKB/Swiss-Prot

A0JBT0, A0JBT1, P48725

UniProtKB/TrEMBL

F8VPV0

Related

ENSMUSP00000001179.6, ENSMUST00000001179.7

Conserved Domains (6) summary

COG1196
Location:475 → 1375

Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

COG5281
Location:305 → 577

COG5281; Phage-related minor tail protein [Mobilome: prophages, transposons]

pfam09455
Location:1050 → 1214

Cas_DxTHG; CRISPR-associated (Cas) DxTHG family

pfam10495
Location:2719 → 2797

PACT_coil_coil; Pericentrin-AKAP-450 domain of centrosomal targeting protein

pfam12474
Location:154 → 308

PKK; Polo kinase kinase

pfam15290
Location:1413 → 1479

Syntaphilin; Golgi-localized syntaxin-1-binding clamp

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

NC_000076.7 Reference GRCm39 C57BL/6J

Range

76187098..76279988 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_030244950.2 → XP_030100810.1 pericentrin isoform X8

UniProtKB/Swiss-Prot

A0JBT0, A0JBT1, P48725

Conserved Domains (4) summary

PTZ00121
Location:133 → 647

PTZ00121; MAEBL; Provisional

COG1196
Location:475 → 1368

Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

TIGR02168
Location:1218 → 1551

SMC_prok_B; chromosome segregation protein SMC, common bacterial type

pfam10495
Location:2789 → 2867

PACT_coil_coil; Pericentrin-AKAP-450 domain of centrosomal targeting protein
XM_011243383.4 → XP_011241685.1 pericentrin isoform X5

UniProtKB/Swiss-Prot

A0JBT0, A0JBT1, P48725

Conserved Domains (4) summary

PTZ00121
Location:133 → 647

PTZ00121; MAEBL; Provisional

COG1196
Location:475 → 1375

Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

TIGR02168
Location:1218 → 1558

SMC_prok_B; chromosome segregation protein SMC, common bacterial type

pfam10495
Location:2796 → 2874

PACT_coil_coil; Pericentrin-AKAP-450 domain of centrosomal targeting protein
XM_036155685.1 → XP_036011578.1 pericentrin isoform X13

Conserved Domains (3) summary

PTZ00121
Location:133 → 647

PTZ00121; MAEBL; Provisional

COG1196
Location:475 → 1386

Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

pfam10495
Location:2712 → 2790

PACT_coil_coil; Pericentrin-AKAP-450 domain of centrosomal targeting protein
XM_017313839.3 → XP_017169328.1 pericentrin isoform X2

UniProtKB/Swiss-Prot

A0JBT0, A0JBT1, P48725

Conserved Domains (4) summary

PTZ00121
Location:133 → 647

PTZ00121; MAEBL; Provisional

COG1196
Location:475 → 1386

Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

TIGR02168
Location:1229 → 1564

SMC_prok_B; chromosome segregation protein SMC, common bacterial type

pfam10495
Location:2807 → 2885

PACT_coil_coil; Pericentrin-AKAP-450 domain of centrosomal targeting protein
XM_011243384.4 → XP_011241686.1 pericentrin isoform X7

UniProtKB/Swiss-Prot

A0JBT0, A0JBT1, P48725

Conserved Domains (4) summary

PTZ00121
Location:133 → 647

PTZ00121; MAEBL; Provisional

COG1196
Location:475 → 1369

Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

TIGR02168
Location:1219 → 1552

SMC_prok_B; chromosome segregation protein SMC, common bacterial type

pfam10495
Location:2790 → 2868

PACT_coil_coil; Pericentrin-AKAP-450 domain of centrosomal targeting protein
XM_006513353.5 → XP_006513416.1 pericentrin isoform X15

UniProtKB/Swiss-Prot

A0JBT0, A0JBT1, P48725

Conserved Domains (4) summary

PTZ00121
Location:133 → 647

PTZ00121; MAEBL; Provisional

COG1196
Location:475 → 1376

Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

TIGR02168
Location:1219 → 1559

SMC_prok_B; chromosome segregation protein SMC, common bacterial type

pfam10495
Location:2702 → 2780

PACT_coil_coil; Pericentrin-AKAP-450 domain of centrosomal targeting protein
XM_006513348.5 → XP_006513411.1 pericentrin isoform X10

UniProtKB/Swiss-Prot

A0JBT0, A0JBT1, P48725

Conserved Domains (4) summary

PTZ00121
Location:133 → 647

PTZ00121; MAEBL; Provisional

COG1196
Location:475 → 1376

Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

TIGR02168
Location:1219 → 1559

SMC_prok_B; chromosome segregation protein SMC, common bacterial type

pfam10495
Location:2779 → 2857

PACT_coil_coil; Pericentrin-AKAP-450 domain of centrosomal targeting protein
XM_011243382.4 → XP_011241684.1 pericentrin isoform X4

UniProtKB/Swiss-Prot

A0JBT0, A0JBT1, P48725

Conserved Domains (4) summary

PTZ00121
Location:133 → 647

PTZ00121; MAEBL; Provisional

COG1196
Location:475 → 1376

Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

TIGR02168
Location:1219 → 1559

SMC_prok_B; chromosome segregation protein SMC, common bacterial type

pfam10495
Location:2797 → 2875

PACT_coil_coil; Pericentrin-AKAP-450 domain of centrosomal targeting protein
XM_036155686.1 → XP_036011579.1 pericentrin isoform X14

UniProtKB/Swiss-Prot

A0JBT0, A0JBT1, P48725

Conserved Domains (3) summary

PTZ00121
Location:133 → 647

PTZ00121; MAEBL; Provisional

COG1196
Location:475 → 1380

Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

pfam10495
Location:2706 → 2784

PACT_coil_coil; Pericentrin-AKAP-450 domain of centrosomal targeting protein
XM_036155684.1 → XP_036011577.1 pericentrin isoform X9

UniProtKB/Swiss-Prot

A0JBT0, A0JBT1, P48725

Conserved Domains (3) summary

PTZ00121
Location:133 → 647

PTZ00121; MAEBL; Provisional

COG1196
Location:475 → 1380

Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

pfam10495
Location:2783 → 2861

PACT_coil_coil; Pericentrin-AKAP-450 domain of centrosomal targeting protein
XM_017313840.3 → XP_017169329.1 pericentrin isoform X3

UniProtKB/Swiss-Prot

A0JBT0, A0JBT1, P48725

Conserved Domains (4) summary

PTZ00121
Location:133 → 647

PTZ00121; MAEBL; Provisional

COG1196
Location:475 → 1380

Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

TIGR02168
Location:1230 → 1558

SMC_prok_B; chromosome segregation protein SMC, common bacterial type

pfam10495
Location:2801 → 2879

PACT_coil_coil; Pericentrin-AKAP-450 domain of centrosomal targeting protein
XM_017313843.3 → XP_017169332.1 pericentrin isoform X12

UniProtKB/Swiss-Prot

A0JBT0, A0JBT1, P48725

Conserved Domains (4) summary

PTZ00121
Location:133 → 647

PTZ00121; MAEBL; Provisional

COG1196
Location:475 → 1387

Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

TIGR02168
Location:1230 → 1565

SMC_prok_B; chromosome segregation protein SMC, common bacterial type

pfam10495
Location:2713 → 2791

PACT_coil_coil; Pericentrin-AKAP-450 domain of centrosomal targeting protein
XM_017313841.3 → XP_017169330.1 pericentrin isoform X6

UniProtKB/Swiss-Prot

A0JBT0, A0JBT1, P48725

Conserved Domains (4) summary

PTZ00121
Location:133 → 647

PTZ00121; MAEBL; Provisional

COG1196
Location:475 → 1387

Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

TIGR02168
Location:1230 → 1565

SMC_prok_B; chromosome segregation protein SMC, common bacterial type

pfam10495
Location:2790 → 2868

PACT_coil_coil; Pericentrin-AKAP-450 domain of centrosomal targeting protein
XM_017313842.3 → XP_017169331.1 pericentrin isoform X11

UniProtKB/Swiss-Prot

A0JBT0, A0JBT1, P48725

Conserved Domains (4) summary

PTZ00121
Location:133 → 647

PTZ00121; MAEBL; Provisional

COG1196
Location:475 → 1387

Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

TIGR02168
Location:1230 → 1565

SMC_prok_B; chromosome segregation protein SMC, common bacterial type

pfam10495
Location:2731 → 2809

PACT_coil_coil; Pericentrin-AKAP-450 domain of centrosomal targeting protein
XM_017313838.3 → XP_017169327.1 pericentrin isoform X1

UniProtKB/Swiss-Prot

A0JBT0, A0JBT1, P48725

Conserved Domains (4) summary

PTZ00121
Location:133 → 647

PTZ00121; MAEBL; Provisional

COG1196
Location:475 → 1387

Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

TIGR02168
Location:1230 → 1565

SMC_prok_B; chromosome segregation protein SMC, common bacterial type

pfam10495
Location:2808 → 2886

PACT_coil_coil; Pericentrin-AKAP-450 domain of centrosomal targeting protein
XM_036155687.1 → XP_036011580.1 pericentrin isoform X16

UniProtKB/Swiss-Prot

A0JBT0, A0JBT1, P48725

Conserved Domains (3) summary

COG1196
Location:545 → 897

Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

TIGR02168
Location:4 → 896

SMC_prok_B; chromosome segregation protein SMC, common bacterial type

pfam10495
Location:2318 → 2396

PACT_coil_coil; Pericentrin-AKAP-450 domain of centrosomal targeting protein
XM_017313845.3 → XP_017169334.1 pericentrin isoform X17

UniProtKB/TrEMBL

Q80U10

Conserved Domains (3) summary

COG1196
Location:138 → 470

Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

TIGR02168
Location:313 → 648

SMC_prok_B; chromosome segregation protein SMC, common bacterial type

pfam10495
Location:1891 → 1969

PACT_coil_coil; Pericentrin-AKAP-450 domain of centrosomal targeting protein
XM_006513356.3 → XP_006513419.1 pericentrin isoform X19

Related

ENSMUST00000220395.2

Conserved Domains (3) summary

COG1196
Location:138 → 459

Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

TIGR02168
Location:302 → 642

SMC_prok_B; chromosome segregation protein SMC, common bacterial type

pfam10495
Location:1785 → 1863

PACT_coil_coil; Pericentrin-AKAP-450 domain of centrosomal targeting protein
XM_036155688.1 → XP_036011581.1 pericentrin isoform X18

UniProtKB/TrEMBL

Q80U10

Conserved Domains (3) summary

COG1196
Location:138 → 470

Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

TIGR02169
Location:1114 → 1392

SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

pfam10495
Location:1796 → 1874

PACT_coil_coil; Pericentrin-AKAP-450 domain of centrosomal targeting protein