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Oit3 oncoprotein induced transcript 3 [ Mus musculus (house mouse) ]

Gene ID: 18302, updated on 21-Apr-2024

Summary

Official Symbol
Oit3provided by MGI
Official Full Name
oncoprotein induced transcript 3provided by MGI
Primary source
MGI:MGI:1201782
See related
Ensembl:ENSMUSG00000009654 AllianceGenome:MGI:1201782
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
LZP; EF-9
Summary
Predicted to be an extracellular matrix structural constituent. Acts upstream of or within urate homeostasis. Predicted to be located in nucleus. Predicted to be active in cell surface and extracellular space. Is expressed in embryo and liver. Orthologous to human OIT3 (oncoprotein induced transcript 3). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in liver E18 (RPKM 16.9), liver E14.5 (RPKM 11.4) and 7 other tissues See more
Orthologs
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Genomic context

Location:
10 B4; 10 29.54 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (59258782..59277601, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (59422960..59441779, complement)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene translocase of inner mitochondrial membrane 23 homolog pseudogene Neighboring gene phospholipase A2, group XIIB Neighboring gene predicted gene, 36318 Neighboring gene mitochondrial calcium uniporter Neighboring gene STARR-seq mESC enhancer starr_26771 Neighboring gene STARR-seq mESC enhancer starr_26772 Neighboring gene predicted gene, 40671 Neighboring gene STARR-positive B cell enhancer ABC_E9788 Neighboring gene predicted gene 10322

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2)  1 citation
  • Endonuclease-mediated (2) 

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within renal system process IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
oncoprotein-induced transcript 3 protein
Names
liver-specific zona pellucida domain-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_010959.2NP_035089.1  oncoprotein-induced transcript 3 protein precursor

    See identical proteins and their annotated locations for NP_035089.1

    Status: PROVISIONAL

    Source sequence(s)
    AK040570
    Consensus CDS
    CCDS23865.1
    UniProtKB/Swiss-Prot
    P97806, Q811T0, Q8C9U1, Q8R4V5
    Related
    ENSMUSP00000009798.5, ENSMUST00000009798.5
    Conserved Domains (3) summary
    smart00241
    Location:268513
    ZP; Zona pellucida (ZP) domain
    pfam00100
    Location:394513
    Zona_pellucida; Zona pellucida-like domain
    pfam14670
    Location:227262
    FXa_inhibition; Coagulation Factor Xa inhibitory site

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    59258782..59277601 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)