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vap-1 SCP domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 181768, updated on 23-Nov-2023

Summary

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Gene symbol
vap-1
Gene description
SCP domain-containing protein
Primary source
WormBase:WBGene00006886
Locus tag
CELE_F11C7.3
See related
AllianceGenome:WB:WBGene00006886
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be active in extracellular space. Is expressed in amphid sheath cell. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See vap-1 in Genome Data Viewer
Location:
chromosome: X
Exon count:
8
Sequence:
Chromosome: X; NC_003284.9 (17393939..17396556, complement)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase NEURL1B;NHR domain-containing protein;Neuralized-like protein 2 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ShKT domain-containing protein Neighboring gene Venom protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The barber's pole worm CAP protein superfamily--A basis for fundamental discovery and biotechnology advances. Mohandas N, et al. Biotechnol Adv, 2015 Dec. PMID 26239368
  2. CAP protein superfamily members in Toxocara canis. Stroehlein AJ, et al. Parasit Vectors, 2016 Jun 24. PMID 27342979, Free PMC Article
  3. Molecular pathways that influence human tau-induced pathology in Caenorhabditis elegans. Kraemer BC, et al. Hum Mol Genet, 2006 May 1. PMID 16600994
  4. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  5. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
SCP domain-containing protein
NP_001024553.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    17393939..17396556 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001029382.3 → NP_001024553.1  SCP domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001024553.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q19348, Q8MQ79
    Conserved Domains (1) summary
    smart00198
    Location:234 → 386
    SCP; SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains
Nucleotide Protein
Heading Accession and Version

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