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Zfp638 zinc finger protein 638 [ Mus musculus (house mouse) ]

Gene ID: 18139, updated on 11-Apr-2024

Summary

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Official Symbol
Zfp638provided by MGI
Official Full Name
zinc finger protein 638provided by MGI
Primary source
MGI:MGI:1203484
See related
Ensembl:ENSMUSG00000030016 AllianceGenome:MGI:1203484
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Zfml; Np220; Znf638; mNP220
Summary
Predicted to enable RNA binding activity. Predicted to be involved in RNA splicing. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Is expressed in several structures, including central nervous system; dorsal root ganglion; early conceptus; genitourinary system; and sensory organ. Orthologous to human ZNF638 (zinc finger protein 638). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in CNS E11.5 (RPKM 14.4), CNS E14 (RPKM 10.9) and 20 other tissues See more
Orthologs
human all
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Genomic context

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Location:
6 C3; 6 36.06 cM
Exon count:
29
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (83844050..83963855)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (83867068..83986871)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene ribosomal protein L18 pseudogene Neighboring gene ribosomal protein S8 pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E8111 Neighboring gene STARR-seq mESC enhancer starr_16471 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene predicted gene, 33024 Neighboring gene dysferlin Neighboring gene heterogeneous nuclear ribonucleoprotein A3 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The adipogenic transcriptional cofactor ZNF638 interacts with splicing regulators and influences alternative splicing. Du C, et al. J Lipid Res, 2014 Sep. PMID 25024404, Free PMC Article
  2. A family of novel DNA-binding nuclear proteins having polypyrimidine tract-binding motif and arginine/serine-rich motif. Matsushima Y, et al. Biochem Biophys Res Commun, 1996 Jun 14. PMID 8670298
  3. Regulation of adipocyte differentiation by the zinc finger protein ZNF638. Meruvu S, et al. J Biol Chem, 2011 Jul 29. PMID 21602272, Free PMC Article
  4. USP7 mediates pathological hepatic de novo lipogenesis through promoting stabilization and transcription of ZNF638. Ni W, et al. Cell Death Dis, 2020 Oct 10. PMID 33040080, Free PMC Article
  5. Comprehensive interactome of Otx2 in the adult mouse neural retina. Fant B, et al. Genesis, 2015 Nov. PMID 26426291

See all (35) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Zinc finger protein ZNF638 regulates triglyceride metabolism via ANGPTL8 in an estrogen dependent manner.
    Title: Zinc finger protein ZNF638 regulates triglyceride metabolism via ANGPTL8 in an estrogen dependent manner.
  2. USP7 mediates pathological hepatic de novo lipogenesis through promoting stabilization and transcription of ZNF638.
    Title: USP7 mediates pathological hepatic de novo lipogenesis through promoting stabilization and transcription of ZNF638.
  3. ZNF638 participates in splicing decisions and that it may control adipogenesis through regulation of the relative amounts of differentiation-specific isoforms.
    Title: The adipogenic transcriptional cofactor ZNF638 interacts with splicing regulators and influences alternative splicing.
  4. ZNF638 is a novel and early regulator of adipogenesis that works as a transcription cofactor of C/EBPs.
    Title: Regulation of adipocyte differentiation by the zinc finger protein ZNF638.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (4) 

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in RNA splicing IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of RNA splicing IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
  
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
zinc finger protein 638
Names
nuclear protein 220
zinc finger matrin-like protein
zinc finger, matrin-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001166371.2 → NP_001159843.1  zinc finger protein 638 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC153607, AC156283
    Consensus CDS
    CCDS51823.1
    UniProtKB/TrEMBL
    E9QKZ7
    Related
    ENSMUSP00000109466.4, ENSMUST00000113835.10
    Conserved Domains (4) summary
    smart00451
    Location:1220 → 1252
    ZnF_U1; U1-like zinc finger
    cd12436
    Location:983 → 1056
    RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
    cd12716
    Location:879 → 953
    RRM1_2_NP220; RNA recognition motif 1 and 2 in vertebrate nuclear protein 220 (NP220)
    cl17169
    Location:676 → 751
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. NM_001355284.2 → NP_001342213.1  zinc finger protein 638 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC153607, AC156283
    UniProtKB/Swiss-Prot
    Q61464, Q6DFV9, Q8C941
    Conserved Domains (6) summary
    smart00451
    Location:1858 → 1890
    ZnF_U1; U1-like zinc finger
    COG5180
    Location:1043 → 1386
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    cd12436
    Location:955 → 1028
    RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
    cd12716
    Location:851 → 925
    RRM1_2_NP220; RNA recognition motif 1 and 2 in vertebrate nuclear protein 220 (NP220)
    TIGR01649
    Location:852 → 1152
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
    cl17169
    Location:676 → 751
    RRM_SF; RNA recognition motif (RRM) superfamily

  3. NM_001355285.2 → NP_001342214.1  zinc finger protein 638 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC153607, AC156283
    UniProtKB/Swiss-Prot
    Q61464, Q6DFV9, Q8C941
    Conserved Domains (7) summary
    smart00451
    Location:1824 → 1856
    ZnF_U1; U1-like zinc finger
    cd12436
    Location:955 → 1028
    RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
    cd12716
    Location:851 → 925
    RRM1_2_NP220; RNA recognition motif 1 and 2 in vertebrate nuclear protein 220 (NP220)
    TIGR01649
    Location:852 → 1152
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
    pfam05110
    Location:549 → 674
    AF-4; AF-4 proto-oncoprotein
    cl17169
    Location:676 → 751
    RRM_SF; RNA recognition motif (RRM) superfamily
    cl26950
    Location:1043 → 1386
    LsmAD; LsmAD domain

  4. NM_001355286.2 → NP_001342215.1  zinc finger protein 638 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC153607, AC156283
    Consensus CDS
    CCDS20288.1
    UniProtKB/Swiss-Prot
    Q61464, Q6DFV9, Q8C941
    UniProtKB/TrEMBL
    A0A0N4SV80
    Conserved Domains (8) summary
    smart00451
    Location:1875 → 1907
    ZnF_U1; U1-like zinc finger
    cd12436
    Location:1006 → 1079
    RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
    cd12716
    Location:902 → 976
    RRM1_2_NP220; RNA recognition motif 1 and 2 in vertebrate nuclear protein 220 (NP220)
    TIGR01649
    Location:903 → 1203
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
    pfam05110
    Location:549 → 674
    AF-4; AF-4 proto-oncoprotein
    cl17169
    Location:676 → 751
    RRM_SF; RNA recognition motif (RRM) superfamily
    cl26511
    Location:740 → 900
    Neuromodulin_N; Gap junction protein N-terminal region
    cl26950
    Location:1094 → 1437
    LsmAD; LsmAD domain

  5. NM_001406071.1 → NP_001393000.1  zinc finger protein 638 isoform 6

    Status: VALIDATED

    Source sequence(s)
    AC153607, AC156283

  6. NM_001406072.1 → NP_001393001.1  zinc finger protein 638 isoform 7

    Status: VALIDATED

    Source sequence(s)
    AC153607, AC156283

  7. NM_001406073.1 → NP_001393002.1  zinc finger protein 638 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AC153607, AC156283

  8. NM_001406074.1 → NP_001393003.1  zinc finger protein 638 isoform 8

    Status: VALIDATED

    Source sequence(s)
    AC153607, AC156283
    UniProtKB/TrEMBL
    E9QML5
    Related
    ENSMUSP00000032088.9, ENSMUST00000032088.14

  9. NM_001406075.1 → NP_001393004.1  zinc finger protein 638 isoform 9

    Status: VALIDATED

    Source sequence(s)
    AC153607, AC156283

  10. NM_001406076.1 → NP_001393005.1  zinc finger protein 638 isoform 10

    Status: VALIDATED

    Source sequence(s)
    AC153607, AC156283

  11. NM_001406077.1 → NP_001393006.1  zinc finger protein 638 isoform 11

    Status: VALIDATED

    Source sequence(s)
    AC153607, AC156283

  12. NM_001406078.1 → NP_001393007.1  zinc finger protein 638 isoform 12

    Status: VALIDATED

    Source sequence(s)
    AC153607, AC156283
    UniProtKB/TrEMBL
    A0A0N4SV38
    Related
    ENSMUSP00000144939.2, ENSMUST00000203891.3

  13. NM_001406079.1 → NP_001393008.1  zinc finger protein 638 isoform 13

    Status: VALIDATED

    Source sequence(s)
    AC153607, AC156283

  14. NM_001406080.1 → NP_001393009.1  zinc finger protein 638 isoform 14

    Status: VALIDATED

    Source sequence(s)
    AC153607, AC156283

  15. NM_001406081.1 → NP_001393010.1  zinc finger protein 638 isoform 15

    Status: VALIDATED

    Source sequence(s)
    AC153607, AC156283

  16. NM_001406082.1 → NP_001393011.1  zinc finger protein 638 isoform 15

    Status: VALIDATED

    Source sequence(s)
    AC153607, AC156283

  17. NM_001406083.1 → NP_001393012.1  zinc finger protein 638 isoform 16

    Status: VALIDATED

    Source sequence(s)
    AC153607, AC156283

  18. NM_001406084.1 → NP_001393013.1  zinc finger protein 638 isoform 17

    Status: VALIDATED

    Source sequence(s)
    AC153607, AC156283

  19. NM_008717.4 → NP_032743.2  zinc finger protein 638 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC153607, AC156283
    Consensus CDS
    CCDS20288.1
    UniProtKB/Swiss-Prot
    Q61464, Q6DFV9, Q8C941
    UniProtKB/TrEMBL
    A0A0N4SV80
    Related
    ENSMUSP00000144989.2, ENSMUST00000204751.3
    Conserved Domains (8) summary
    smart00451
    Location:1875 → 1907
    ZnF_U1; U1-like zinc finger
    cd12436
    Location:1006 → 1079
    RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
    cd12716
    Location:902 → 976
    RRM1_2_NP220; RNA recognition motif 1 and 2 in vertebrate nuclear protein 220 (NP220)
    TIGR01649
    Location:903 → 1203
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
    pfam05110
    Location:549 → 674
    AF-4; AF-4 proto-oncoprotein
    cl17169
    Location:676 → 751
    RRM_SF; RNA recognition motif (RRM) superfamily
    cl26511
    Location:740 → 900
    Neuromodulin_N; Gap junction protein N-terminal region
    cl26950
    Location:1094 → 1437
    LsmAD; LsmAD domain

RNA

  1. NR_176013.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC153607, AC156283

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    83844050..83963855
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006505704.4 → XP_006505767.1  zinc finger protein 638 isoform X1

    UniProtKB/Swiss-Prot
    Q61464, Q6DFV9, Q8C941
    Conserved Domains (7) summary
    PTZ00121
    Location:836 → 996
    PTZ00121; MAEBL; Provisional
    smart00451
    Location:2005 → 2037
    ZnF_U1; U1-like zinc finger
    COG5180
    Location:1190 → 1533
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    cd12436
    Location:1102 → 1175
    RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
    cd12716
    Location:998 → 1072
    RRM1_2_NP220; RNA recognition motif 1 and 2 in vertebrate nuclear protein 220 (NP220)
    TIGR01649
    Location:999 → 1299
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
    cl17169
    Location:772 → 847
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_006505711.5 → XP_006505774.1  zinc finger protein 638 isoform X11

    UniProtKB/TrEMBL
    A0A0N4SVI8
    Related
    ENSMUSP00000145124.2, ENSMUST00000203324.3
    Conserved Domains (5) summary
    PTZ00121
    Location:836 → 996
    PTZ00121; MAEBL; Provisional
    smart00451
    Location:1318 → 1350
    ZnF_U1; U1-like zinc finger
    cd12436
    Location:1102 → 1175
    RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
    cd12716
    Location:998 → 1072
    RRM1_2_NP220; RNA recognition motif 1 and 2 in vertebrate nuclear protein 220 (NP220)
    cl17169
    Location:772 → 847
    RRM_SF; RNA recognition motif (RRM) superfamily

  3. XM_006505712.5 → XP_006505775.1  zinc finger protein 638 isoform X13

    UniProtKB/TrEMBL
    A0A0N4SVI8
    Conserved Domains (5) summary
    PTZ00121
    Location:836 → 996
    PTZ00121; MAEBL; Provisional
    smart00451
    Location:1284 → 1316
    ZnF_U1; U1-like zinc finger
    cd12436
    Location:1102 → 1175
    RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
    cd12716
    Location:998 → 1072
    RRM1_2_NP220; RNA recognition motif 1 and 2 in vertebrate nuclear protein 220 (NP220)
    cl17169
    Location:772 → 847
    RRM_SF; RNA recognition motif (RRM) superfamily

  4. XM_006505705.5 → XP_006505768.1  zinc finger protein 638 isoform X2

    UniProtKB/Swiss-Prot
    Q61464, Q6DFV9, Q8C941
    Conserved Domains (7) summary
    PTZ00121
    Location:836 → 973
    PTZ00121; MAEBL; Provisional
    smart00451
    Location:1982 → 2014
    ZnF_U1; U1-like zinc finger
    COG5180
    Location:1167 → 1510
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    cd12436
    Location:1079 → 1152
    RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
    cd12716
    Location:975 → 1049
    RRM1_2_NP220; RNA recognition motif 1 and 2 in vertebrate nuclear protein 220 (NP220)
    TIGR01649
    Location:976 → 1276
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
    cl17169
    Location:772 → 847
    RRM_SF; RNA recognition motif (RRM) superfamily

  5. XM_017321429.3 → XP_017176918.1  zinc finger protein 638 isoform X5

    UniProtKB/Swiss-Prot
    Q61464, Q6DFV9, Q8C941
    Conserved Domains (6) summary
    PTZ00121
    Location:836 → 973
    PTZ00121; MAEBL; Provisional
    smart00451
    Location:1948 → 1980
    ZnF_U1; U1-like zinc finger
    COG5180
    Location:1167 → 1510
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    cd12436
    Location:1079 → 1152
    RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
    cd12716
    Location:975 → 1049
    RRM1_2_NP220; RNA recognition motif 1 and 2 in vertebrate nuclear protein 220 (NP220)
    cl17169
    Location:772 → 847
    RRM_SF; RNA recognition motif (RRM) superfamily

  6. XM_017321435.3 → XP_017176924.1  zinc finger protein 638 isoform X12

    UniProtKB/TrEMBL
    A0A0N4SVI8
    Conserved Domains (5) summary
    PTZ00121
    Location:836 → 973
    PTZ00121; MAEBL; Provisional
    smart00451
    Location:1295 → 1327
    ZnF_U1; U1-like zinc finger
    cd12436
    Location:1079 → 1152
    RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
    cd12716
    Location:975 → 1049
    RRM1_2_NP220; RNA recognition motif 1 and 2 in vertebrate nuclear protein 220 (NP220)
    cl17169
    Location:772 → 847
    RRM_SF; RNA recognition motif (RRM) superfamily

  7. XM_036165916.1 → XP_036021809.1  zinc finger protein 638 isoform X15

    UniProtKB/TrEMBL
    A0A0N4SVI8
    Conserved Domains (4) summary
    PTZ00121
    Location:836 → 973
    PTZ00121; MAEBL; Provisional
    smart00451
    Location:1261 → 1293
    ZnF_U1; U1-like zinc finger
    cd12716
    Location:975 → 1049
    RRM1_2_NP220; RNA recognition motif 1 (RRM1) and 2 (RRM2) found in vertebrate nuclear protein 220 (NP220)
    cl17169
    Location:772 → 847
    RRM_SF; RNA recognition motif (RRM) superfamily

  8. XM_036165914.1 → XP_036021807.1  zinc finger protein 638 isoform X14

    UniProtKB/TrEMBL
    A0A0N4SVI8
    Conserved Domains (4) summary
    PRK14907
    Location:847 → 968
    rplD; 50S ribosomal protein L4; Provisional
    smart00451
    Location:1267 → 1299
    ZnF_U1; U1-like zinc finger
    cd12716
    Location:947 → 1021
    RRM1_2_NP220; RNA recognition motif 1 (RRM1) and 2 (RRM2) found in vertebrate nuclear protein 220 (NP220)
    cl17169
    Location:772 → 847
    RRM_SF; RNA recognition motif (RRM) superfamily

  9. XM_036165917.1 → XP_036021810.1  zinc finger protein 638 isoform X16

    UniProtKB/TrEMBL
    A0A0N4SVI8
    Conserved Domains (4) summary
    PRK14907
    Location:847 → 968
    rplD; 50S ribosomal protein L4; Provisional
    smart00451
    Location:1233 → 1265
    ZnF_U1; U1-like zinc finger
    cd12716
    Location:947 → 1021
    RRM1_2_NP220; RNA recognition motif 1 (RRM1) and 2 (RRM2) found in vertebrate nuclear protein 220 (NP220)
    cl17169
    Location:772 → 847
    RRM_SF; RNA recognition motif (RRM) superfamily

  10. XM_011241247.4 → XP_011239549.1  zinc finger protein 638 isoform X6

    UniProtKB/Swiss-Prot
    Q61464, Q6DFV9, Q8C941
    Conserved Domains (5) summary
    smart00451
    Location:1931 → 1963
    ZnF_U1; U1-like zinc finger
    COG5180
    Location:1116 → 1459
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    cd12436
    Location:1028 → 1101
    RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
    cd12716
    Location:924 → 998
    RRM1_2_NP220; RNA recognition motif 1 and 2 in vertebrate nuclear protein 220 (NP220)
    cl17169
    Location:772 → 847
    RRM_SF; RNA recognition motif (RRM) superfamily

  11. XM_017321437.3 → XP_017176926.1  zinc finger protein 638 isoform X19

    UniProtKB/TrEMBL
    A0A0N4SVI8
    Conserved Domains (4) summary
    PTZ00121
    Location:836 → 996
    PTZ00121; MAEBL; Provisional
    cd12436
    Location:1102 → 1175
    RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
    cd12716
    Location:998 → 1072
    RRM1_2_NP220; RNA recognition motif 1 and 2 in vertebrate nuclear protein 220 (NP220)
    cl17169
    Location:772 → 847
    RRM_SF; RNA recognition motif (RRM) superfamily

  12. XM_017321434.3 → XP_017176923.1  zinc finger protein 638 isoform X8

    UniProtKB/Swiss-Prot
    Q61464, Q6DFV9, Q8C941
    UniProtKB/TrEMBL
    E9QML5
    Conserved Domains (7) summary
    PTZ00121
    Location:740 → 900
    PTZ00121; MAEBL; Provisional
    smart00451
    Location:1909 → 1941
    ZnF_U1; U1-like zinc finger
    COG5180
    Location:1094 → 1437
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    cd12436
    Location:1006 → 1079
    RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
    cd12716
    Location:902 → 976
    RRM1_2_NP220; RNA recognition motif 1 and 2 in vertebrate nuclear protein 220 (NP220)
    TIGR01649
    Location:903 → 1203
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
    cl17169
    Location:676 → 751
    RRM_SF; RNA recognition motif (RRM) superfamily

  13. XM_006505709.5 → XP_006505772.1  zinc finger protein 638 isoform X8

    See identical proteins and their annotated locations for XP_006505772.1

    UniProtKB/Swiss-Prot
    Q61464, Q6DFV9, Q8C941
    UniProtKB/TrEMBL
    E9QML5
    Conserved Domains (7) summary
    PTZ00121
    Location:740 → 900
    PTZ00121; MAEBL; Provisional
    smart00451
    Location:1909 → 1941
    ZnF_U1; U1-like zinc finger
    COG5180
    Location:1094 → 1437
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    cd12436
    Location:1006 → 1079
    RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
    cd12716
    Location:902 → 976
    RRM1_2_NP220; RNA recognition motif 1 and 2 in vertebrate nuclear protein 220 (NP220)
    TIGR01649
    Location:903 → 1203
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
    cl17169
    Location:676 → 751
    RRM_SF; RNA recognition motif (RRM) superfamily

  14. XM_036165913.1 → XP_036021806.1  zinc finger protein 638 isoform X9

    UniProtKB/Swiss-Prot
    Q61464, Q6DFV9, Q8C941
    Conserved Domains (6) summary
    PTZ00121
    Location:740 → 877
    PTZ00121; MAEBL; Provisional
    smart00451
    Location:1886 → 1918
    ZnF_U1; U1-like zinc finger
    COG5180
    Location:1071 → 1414
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    TIGR01649
    Location:880 → 1180
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
    cd12716
    Location:879 → 953
    RRM1_2_NP220; RNA recognition motif 1 (RRM1) and 2 (RRM2) found in vertebrate nuclear protein 220 (NP220)
    cl17169
    Location:676 → 751
    RRM_SF; RNA recognition motif (RRM) superfamily

  15. XM_030255215.2 → XP_030111075.1  zinc finger protein 638 isoform X9

    UniProtKB/Swiss-Prot
    Q61464, Q6DFV9, Q8C941
    Conserved Domains (6) summary
    PTZ00121
    Location:740 → 877
    PTZ00121; MAEBL; Provisional
    smart00451
    Location:1886 → 1918
    ZnF_U1; U1-like zinc finger
    COG5180
    Location:1071 → 1414
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    TIGR01649
    Location:880 → 1180
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
    cd12716
    Location:879 → 953
    RRM1_2_NP220; RNA recognition motif 1 (RRM1) and 2 (RRM2) found in vertebrate nuclear protein 220 (NP220)
    cl17169
    Location:676 → 751
    RRM_SF; RNA recognition motif (RRM) superfamily

  16. XM_006505714.5 → XP_006505777.1  zinc finger protein 638 isoform X17

    Conserved Domains (6) summary
    PRK13808
    Location:32 → 160
    PRK13808; adenylate kinase; Provisional
    smart00451
    Location:1191 → 1223
    ZnF_U1; U1-like zinc finger
    COG5180
    Location:376 → 719
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    cd12436
    Location:288 → 361
    RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
    TIGR01649
    Location:185 → 485
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
    cl17169
    Location:184 → 258
    RRM_SF; RNA recognition motif (RRM) superfamily

  17. XM_036165919.1 → XP_036021812.1  zinc finger protein 638 isoform X22

    Conserved Domains (5) summary
    smart00451
    Location:1117 → 1149
    ZnF_U1; U1-like zinc finger
    COG5180
    Location:302 → 645
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    TIGR01649
    Location:111 → 411
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
    cd12716
    Location:110 → 184
    RRM1_2_NP220; RNA recognition motif 1 (RRM1) and 2 (RRM2) found in vertebrate nuclear protein 220 (NP220)
    cl17169
    Location:214 → 272
    RRM_SF; RNA recognition motif (RRM) superfamily

  18. XM_030255216.2 → XP_030111076.1  zinc finger protein 638 isoform X20

    Conserved Domains (5) summary
    smart00451
    Location:1140 → 1172
    ZnF_U1; U1-like zinc finger
    COG5180
    Location:325 → 668
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    cd12436
    Location:237 → 310
    RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
    TIGR01649
    Location:134 → 434
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
    cl17169
    Location:133 → 207
    RRM_SF; RNA recognition motif (RRM) superfamily

  19. XM_006505710.3 → XP_006505773.1  zinc finger protein 638 isoform X10

    UniProtKB/Swiss-Prot
    Q61464, Q6DFV9, Q8C941
    Conserved Domains (6) summary
    smart00451
    Location:1858 → 1890
    ZnF_U1; U1-like zinc finger
    COG5180
    Location:1043 → 1386
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    cd12436
    Location:955 → 1028
    RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
    cd12716
    Location:851 → 925
    RRM1_2_NP220; RNA recognition motif 1 and 2 in vertebrate nuclear protein 220 (NP220)
    TIGR01649
    Location:852 → 1152
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
    cl17169
    Location:676 → 751
    RRM_SF; RNA recognition motif (RRM) superfamily

RNA

  1. XR_004942919.1 RNA Sequence

  2. XR_001785106.3 RNA Sequence

  3. XR_004942920.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q61464.2 GenPept UniProtKB/Swiss-Prot:Q61464

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