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Mcpt1 mast cell protease 1 [ Mus musculus (house mouse) ]

Gene ID: 17224, updated on 2-May-2024

Summary

Official Symbol
Mcpt1provided by MGI
Official Full Name
mast cell protease 1provided by MGI
Primary source
MGI:MGI:96937
See related
Ensembl:ENSMUSG00000022227 AllianceGenome:MGI:96937
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Mcp-1
Summary
Predicted to enable serine-type endopeptidase activity. Acts upstream of or within cellular response to xenobiotic stimulus. Located in extracellular space. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in stomach adult (RPKM 16.7), large intestine adult (RPKM 13.9) and 2 other tissues See more
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Genomic context

Location:
14 C3; 14 28.19 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (56255421..56257848)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (56017964..56020391)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene mast cell protease, pseudogene 1 Neighboring gene chymase 2, mast cell Neighboring gene STARR-seq mESC enhancer starr_36788 Neighboring gene STARR-seq mESC enhancer starr_36789 Neighboring gene STARR-seq mESC enhancer starr_36790 Neighboring gene ubiquitin-conjugating enzyme E2, J2 homolog pseudogene Neighboring gene mast cell protease 2 Neighboring gene mast cell protease 9 Neighboring gene mast cell protease 4

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1)  1 citation
  • Endonuclease-mediated (3) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
enables peptidase activity IEA
Inferred from Electronic Annotation
more info
 
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 
enables serine-type peptidase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to xenobiotic stimulus IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within proteolysis IEA
Inferred from Electronic Annotation
more info
 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in extracellular space IDA
Inferred from Direct Assay
more info
PubMed 
located_in intracellular anatomical structure IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in intracellular membrane-bounded organelle IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
mast cell protease 1
Names
MMCP-1
NP_032596.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_008570.1NP_032596.1  mast cell protease 1 precursor

    See identical proteins and their annotated locations for NP_032596.1

    Status: PROVISIONAL

    Source sequence(s)
    X68803
    Consensus CDS
    CCDS27137.1
    UniProtKB/Swiss-Prot
    P11034
    UniProtKB/TrEMBL
    Q496V0
    Related
    ENSMUSP00000022836.5, ENSMUST00000022836.6
    Conserved Domains (2) summary
    smart00020
    Location:20239
    Tryp_SPc; Trypsin-like serine protease
    cd00190
    Location:21242
    Tryp_SPc; Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad ...

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    56255421..56257848
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)