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lncRNA:CR43836 long non-coding RNA:CR43836 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 14462390, updated on 29-Dec-2023

Summary

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Official Symbol
lncRNA:CR43836provided by FlyBase
Official Full Name
long non-coding RNA:CR43836provided by FlyBase
Primary source
FLYBASE:FBgn0264384
Locus tag
Dmel_CR43836
See related
AllianceGenome:FB:FBgn0264384
Gene type
ncRNA
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
BcDNA:RE29909; CR43836; Dmel\CR43836
Summary
Is expressed in embryonic hindgut; embryonic midgut chamber; embryonic proventriculus; embryonic/larval visceral muscle cell; and organism. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
8C1-8C4; 1-26 cM
Exon count:
6
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (8972908..9048991, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (8866941..8943024, complement)

Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene retinal degeneration A Neighboring gene uncharacterized protein Neighboring gene mir-4964 stem loop Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene mir-31b stem loop Neighboring gene Nostrin Neighboring gene antisense RNA:CR45538 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Oviposition behaviour in Drosophila melanogaster: Genetic and behavioural decoupling between oviposition acceptance and preference for natural fruits. Fanara JJ, et al. J Evol Biol, 2023 Jan. PMID 36357966
  2. Diverse and pervasive subcellular distributions for both coding and long noncoding RNAs. Wilk R, et al. Genes Dev, 2016 Mar 1. PMID 26944682, Free PMC Article
  3. Comparative Expression Dynamics of Intergenic Long Noncoding RNAs in the Genus Drosophila. Nyberg KG, et al. Genome Biol Evol, 2016 Jun 27. PMID 27189981, Free PMC Article
  4. Expression-Based Cell Lineage Analysis in Drosophila Through a Course-Based Research Experience for Early Undergraduates. Olson JM, et al. G3 (Bethesda), 2019 Nov 5. PMID 31690598, Free PMC Article
  5. The genetic basis for variation in olfactory behavior in Drosophila melanogaster. Arya GH, et al. Chem Senses, 2015 May. PMID 25687947, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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  • lncRNA:CR43836-RA; Dmel\lncRNA:CR43836-RA; CR43836-RA; Dmel\CR43836-RA
  • lncRNA:CR43836-RB; Dmel\lncRNA:CR43836-RB; CR43836-RB; Dmel\CR43836-RB
  • lncRNA:CR43836-RC; Dmel\lncRNA:CR43836-RC; CR43836-RC; Dmel\CR43836-RC

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004354.4 Reference assembly

    Range
    8972908..9048991 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_073641.2 RNA Sequence

    Status: REVIEWED

  2. NR_073642.2 RNA Sequence

    Status: REVIEWED

  3. NR_073643.1 RNA Sequence

    Status: REVIEWED

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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