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Fnbp1 formin binding protein 1 [ Mus musculus (house mouse) ]

Gene ID: 14269, updated on 5-Mar-2024

Summary

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Official Symbol
Fnbp1provided by MGI
Official Full Name
formin binding protein 1provided by MGI
Primary source
MGI:MGI:109606
See related
Ensembl:ENSMUSG00000075415 AllianceGenome:MGI:109606
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
FBP1; Fbp17; 1110057E06Rik; 2210010H06Rik
Summary
Predicted to enable identical protein binding activity. Predicted to be involved in nervous system development. Predicted to be located in intracellular membrane-bounded organelle and plasma membrane. Is expressed in bladder; gut; and nervous system. Orthologous to human FNBP1 (formin binding protein 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in cerebellum adult (RPKM 39.4), bladder adult (RPKM 33.9) and 26 other tissues See more
Orthologs
human all
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Genomic context

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Location:
2 B; 2 21.78 cM
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (30916218..31032046, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (31026206..31145454, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene cDNA sequence BC005624 Neighboring gene predicted gene, 39786 Neighboring gene ubiquitin specific peptidase 20 Neighboring gene STARR-positive B cell enhancer ABC_E9195 Neighboring gene STARR-positive B cell enhancer ABC_E4431 Neighboring gene STARR-seq mESC enhancer starr_04135 Neighboring gene STARR-positive B cell enhancer ABC_E4432 Neighboring gene STARR-positive B cell enhancer ABC_E9196 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:30971715-30971947 Neighboring gene STARR-positive B cell enhancer ABC_E5904 Neighboring gene RIKEN cDNA D330023K18 gene Neighboring gene STARR-seq mESC enhancer starr_04141 Neighboring gene STARR-positive B cell enhancer ABC_E10092 Neighboring gene G protein-coupled receptor 107 Neighboring gene predicted gene, 22516

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Efficient conditional and promoter-specific in vivo expression of cDNAs of choice by taking advantage of recombinase-mediated cassette exchange using FlEx gene traps. Schebelle L, et al. Nucleic Acids Res, 2010 May. PMID 20139417, Free PMC Article
  2. A novel dynamin-associating molecule, formin-binding protein 17, induces tubular membrane invaginations and participates in endocytosis. Kamioka Y, et al. J Biol Chem, 2004 Sep 17. PMID 15252009
  3. A proline-rich domain in the gamma subunit of phosphodiesterase 6 mediates interaction with SH3-containing proteins. Morin F, et al. Mol Vis, 2003 Sep 18. PMID 14502124
  4. Lysophosphatidic acid induces neurite branch formation through LPA3. Furuta D, et al. Mol Cell Neurosci, 2012 May. PMID 22465231
  5. Formin binding proteins bear WWP/WW domains that bind proline-rich peptides and functionally resemble SH3 domains. Chan DC, et al. EMBO J, 1996 Mar 1. PMID 8605874, Free PMC Article

See all (29) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. FBP17 interacts with dynamin and regulates endocytosis by forming vesicotubular structures.
    Title: A novel dynamin-associating molecule, formin-binding protein 17, induces tubular membrane invaginations and participates in endocytosis.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (4) 

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables identical protein binding ISO
Inferred from Sequence Orthology
more info
  
enables lipid binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within endocytosis IEA
Inferred from Electronic Annotation
more info
  
involved_in endocytosis IEA
Inferred from Electronic Annotation
more info
  
involved_in nervous system development ISO
Inferred from Sequence Orthology
more info
  
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in clathrin-coated pit IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
  
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  
located_in intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
  
located_in lysosome IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
formin-binding protein 1
Names
formin binding protein 17

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001038700.2 → NP_001033789.1  formin-binding protein 1 isoform a

    See identical proteins and their annotated locations for NP_001033789.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) lacks two alternate, in-frame exons, compared to variant 3. The resulting protein (isoform a) is shorter when it is compared to isoform c.
    Source sequence(s)
    AI843002, AK122308, AK143512
    Consensus CDS
    CCDS38097.1
    UniProtKB/TrEMBL
    A2AQ42
    Related
    ENSMUSP00000109192.3, ENSMUST00000113562.9
    Conserved Domains (3) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17
    cl00087
    Location:340 → 416
    HR1; Protein kinase C-related kinase homology region 1 (HR1) domain that binds Rho family small GTPases
    cl17036
    Location:486 → 542
    SH3; Src Homology 3 domain superfamily

  2. NM_001177648.1 → NP_001171119.1  formin-binding protein 1 isoform c

    See identical proteins and their annotated locations for NP_001171119.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) represents the longest transcript and it encodes the longest protein (isoform c).
    Source sequence(s)
    AI843002, AK122308
    Consensus CDS
    CCDS50561.1
    UniProtKB/Swiss-Prot
    A2AQ40, A2AQ46, Q3TA45, Q3TCW9, Q3U081, Q3UPI7, Q80TY0, Q8C727, Q99L37
    UniProtKB/TrEMBL
    A2AQ42
    Related
    ENSMUSP00000109190.2, ENSMUST00000113560.8
    Conserved Domains (3) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17
    cd12071
    Location:552 → 608
    SH3_FBP17; Src Homology 3 domain of Formin Binding Protein 17
    cl00087
    Location:406 → 482
    HR1; Protein kinase C-related kinase homology region 1 (HR1) domain that binds Rho family small GTPases

  3. NM_001177649.1 → NP_001171120.1  formin-binding protein 1 isoform d

    See identical proteins and their annotated locations for NP_001171120.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks two alternate, in-frame exons and uses a different splice site in the 3' coding region, compared to variant 3. The resulting protein (isoform d) is shorter when it is compared to isoform c.
    Source sequence(s)
    AI843002, AK122308, AL844546
    Consensus CDS
    CCDS57165.1
    UniProtKB/TrEMBL
    A2AQ42
    Related
    ENSMUSP00000109194.3, ENSMUST00000113564.9
    Conserved Domains (3) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17
    cl00087
    Location:340 → 416
    HR1; Protein kinase C-related kinase homology region 1 (HR1) domain that binds Rho family small GTPases
    cl17036
    Location:487 → 543
    SH3; Src Homology 3 domain superfamily

  4. NM_001177650.1 → NP_001171121.1  formin-binding protein 1 isoform e

    See identical proteins and their annotated locations for NP_001171121.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) has multiple differences, compared to variant 3. These differences result in a distinct 5' UTR and cause translation initiation at a downstream start codon, compared to variant 1. The encoded protein (isoform e) is shorter when it is compared to isoform c.
    Source sequence(s)
    AI843002, AK122308, AK143512
    Consensus CDS
    CCDS50560.1
    UniProtKB/TrEMBL
    A2AQ42
    Related
    ENSMUSP00000109189.4, ENSMUST00000113559.10
    Conserved Domains (3) summary
    cl00087
    Location:312 → 388
    HR1; Protein kinase C-related kinase homology region 1 (HR1) domain that binds Rho family small GTPases
    cl12013
    Location:1 → 178
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
    cl17036
    Location:458 → 514
    SH3; Src Homology 3 domain superfamily

  5. NM_001355105.1 → NP_001342034.1  formin-binding protein 1 isoform f

    Status: VALIDATED

    Source sequence(s)
    AL844546
    UniProtKB/TrEMBL
    A2AQ42
    Conserved Domains (3) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17
    cl00087
    Location:345 → 421
    HR1; Protein kinase C-related kinase homology region 1 (HR1) domain that binds Rho family small GTPases
    cl17036
    Location:492 → 548
    SH3; Src Homology 3 domain superfamily

  6. NM_001355106.1 → NP_001342035.1  formin-binding protein 1 isoform g

    Status: VALIDATED

    Source sequence(s)
    AL844546
    UniProtKB/TrEMBL
    A2AQ42
    Conserved Domains (3) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17
    cl00087
    Location:345 → 421
    HR1; Protein kinase C-related kinase homology region 1 (HR1) domain that binds Rho family small GTPases
    cl17036
    Location:491 → 547
    SH3; Src Homology 3 domain superfamily

  7. NM_019406.3 → NP_062279.1  formin-binding protein 1 isoform b

    See identical proteins and their annotated locations for NP_062279.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses a different segment for its 3' coding region and UTR, compared to variant 3. The resulting protein (isoform b) has a different and shorter C-terminus when it is compared to isoform c.
    Source sequence(s)
    AK122308, AL844546, BX635769
    Consensus CDS
    CCDS15894.1
    UniProtKB/Swiss-Prot
    Q80TY0
    Related
    ENSMUSP00000109181.3, ENSMUST00000113552.9
    Conserved Domains (1) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    30916218..31032046 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030247490.2 → XP_030103350.1  formin-binding protein 1 isoform X9

    UniProtKB/TrEMBL
    A2AQ42
    Conserved Domains (3) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17
    cl00087
    Location:401 → 477
    HR1; Protein kinase C-related kinase homology region 1 (HR1) domain that binds Rho family small GTPases
    cl17036
    Location:547 → 603
    SH3; Src Homology 3 domain superfamily

  2. XM_030247489.2 → XP_030103349.1  formin-binding protein 1 isoform X8

    UniProtKB/TrEMBL
    A2AQ42
    Conserved Domains (3) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17
    cl00087
    Location:401 → 477
    HR1; Protein kinase C-related kinase homology region 1 (HR1) domain that binds Rho family small GTPases
    cl17036
    Location:548 → 604
    SH3; Src Homology 3 domain superfamily

  3. XM_006497686.3 → XP_006497749.1  formin-binding protein 1 isoform X3

    UniProtKB/TrEMBL
    A2AQ42
    Conserved Domains (3) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17
    cd12071
    Location:580 → 636
    SH3_FBP17; Src Homology 3 domain of Formin Binding Protein 17
    cl00087
    Location:434 → 510
    HR1; Protein kinase C-related kinase homology region 1 (HR1) domain that binds Rho family small GTPases

  4. XM_006497685.3 → XP_006497748.1  formin-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    A2AQ42
    Conserved Domains (3) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17
    cd12071
    Location:581 → 637
    SH3_FBP17; Src Homology 3 domain of Formin Binding Protein 17
    cl00087
    Location:434 → 510
    HR1; Protein kinase C-related kinase homology region 1 (HR1) domain that binds Rho family small GTPases

  5. XM_006497695.5 → XP_006497758.1  formin-binding protein 1 isoform X16

    UniProtKB/TrEMBL
    A2AQ42
    Conserved Domains (3) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17
    cd12071
    Location:552 → 608
    SH3_FBP17; Src Homology 3 domain of Formin Binding Protein 17
    cl00087
    Location:406 → 482
    HR1; Protein kinase C-related kinase homology region 1 (HR1) domain that binds Rho family small GTPases

  6. XM_006497691.5 → XP_006497754.1  formin-binding protein 1 isoform X11

    UniProtKB/TrEMBL
    A2AQ42
    Conserved Domains (3) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17
    cd12071
    Location:581 → 637
    SH3_FBP17; Src Homology 3 domain of Formin Binding Protein 17
    cl00087
    Location:434 → 510
    HR1; Protein kinase C-related kinase homology region 1 (HR1) domain that binds Rho family small GTPases

  7. XM_006497690.3 → XP_006497753.1  formin-binding protein 1 isoform X7

    UniProtKB/TrEMBL
    A2AQ41, A2AQ42
    Related
    ENSMUSP00000097782.3, ENSMUST00000100208.9
    Conserved Domains (3) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17
    cl00087
    Location:401 → 477
    HR1; Protein kinase C-related kinase homology region 1 (HR1) domain that binds Rho family small GTPases
    cl17036
    Location:547 → 603
    SH3; Src Homology 3 domain superfamily

  8. XM_006497689.3 → XP_006497752.1  formin-binding protein 1 isoform X6

    UniProtKB/TrEMBL
    A2AQ42
    Conserved Domains (3) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17
    cl00087
    Location:401 → 477
    HR1; Protein kinase C-related kinase homology region 1 (HR1) domain that binds Rho family small GTPases
    cl17036
    Location:548 → 604
    SH3; Src Homology 3 domain superfamily

  9. XM_006497687.3 → XP_006497750.1  formin-binding protein 1 isoform X4

    UniProtKB/TrEMBL
    A2AQ42
    Conserved Domains (3) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17
    cd12071
    Location:553 → 609
    SH3_FBP17; Src Homology 3 domain of Formin Binding Protein 17
    cl00087
    Location:406 → 482
    HR1; Protein kinase C-related kinase homology region 1 (HR1) domain that binds Rho family small GTPases

  10. XM_006497684.3 → XP_006497747.1  formin-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A2AQ42
    Conserved Domains (3) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17
    cd12071
    Location:580 → 636
    SH3_FBP17; Src Homology 3 domain of Formin Binding Protein 17
    cl00087
    Location:434 → 510
    HR1; Protein kinase C-related kinase homology region 1 (HR1) domain that binds Rho family small GTPases

  11. XM_006497694.3 → XP_006497757.1  formin-binding protein 1 isoform X15

    UniProtKB/TrEMBL
    A2AQ42, A2AQ43
    Related
    ENSMUSP00000109188.2, ENSMUST00000073879.12
    Conserved Domains (3) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17
    cl00087
    Location:340 → 416
    HR1; Protein kinase C-related kinase homology region 1 (HR1) domain that binds Rho family small GTPases
    cl17036
    Location:486 → 542
    SH3; Src Homology 3 domain superfamily

  12. XM_006497693.3 → XP_006497756.1  formin-binding protein 1 isoform X14

    UniProtKB/TrEMBL
    A2AQ42
    Conserved Domains (3) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17
    cl00087
    Location:340 → 416
    HR1; Protein kinase C-related kinase homology region 1 (HR1) domain that binds Rho family small GTPases
    cl17036
    Location:487 → 543
    SH3; Src Homology 3 domain superfamily

  13. XM_017315551.3 → XP_017171040.1  formin-binding protein 1 isoform X13

    UniProtKB/TrEMBL
    A2AQ42, A2AQ44
    Related
    ENSMUSP00000097781.3, ENSMUST00000100207.9
    Conserved Domains (3) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17
    cl00087
    Location:345 → 421
    HR1; Protein kinase C-related kinase homology region 1 (HR1) domain that binds Rho family small GTPases
    cl17036
    Location:491 → 547
    SH3; Src Homology 3 domain superfamily

  14. XM_006497692.3 → XP_006497755.1  formin-binding protein 1 isoform X12

    UniProtKB/TrEMBL
    A2AQ42
    Conserved Domains (3) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17
    cl00087
    Location:345 → 421
    HR1; Protein kinase C-related kinase homology region 1 (HR1) domain that binds Rho family small GTPases
    cl17036
    Location:492 → 548
    SH3; Src Homology 3 domain superfamily

  15. XM_030247491.2 → XP_030103351.1  formin-binding protein 1 isoform X10

    UniProtKB/TrEMBL
    A2AQ42, A2AQ45
    Related
    ENSMUSP00000109184.2, ENSMUST00000113555.8
    Conserved Domains (3) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17
    cl00087
    Location:377 → 453
    HR1; Protein kinase C-related kinase homology region 1 (HR1) domain that binds Rho family small GTPases
    cl17036
    Location:523 → 579
    SH3; Src Homology 3 domain superfamily

  16. XM_006497688.3 → XP_006497751.1  formin-binding protein 1 isoform X5

    UniProtKB/TrEMBL
    A2AQ42
    Conserved Domains (3) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17
    cl00087
    Location:405 → 481
    HR1; Protein kinase C-related kinase homology region 1 (HR1) domain that binds Rho family small GTPases
    cl17036
    Location:552 → 608
    SH3; Src Homology 3 domain superfamily

  17. XM_036158324.1 → XP_036014217.1  formin-binding protein 1 isoform X17

    Conserved Domains (3) summary
    cd11629
    Location:277 → 353
    HR1_FBP17; Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of Formin Binding Protein 17
    cd12071
    Location:424 → 480
    SH3_FBP17; Src Homology 3 domain of Formin Binding Protein 17
    cl12013
    Location:1 → 100
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

RNA

  1. XR_374060.4 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q80TY0.2 GenPept UniProtKB/Swiss-Prot:Q80TY0

Gene LinkOut

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