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Dnase1 deoxyribonuclease I [ Mus musculus (house mouse) ]

Gene ID: 13419, updated on 9-May-2024

Summary

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Official Symbol
Dnase1provided by MGI
Official Full Name
deoxyribonuclease Iprovided by MGI
Primary source
MGI:MGI:103157
See related
Ensembl:ENSMUSG00000005980 AllianceGenome:MGI:103157
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Dnl1; DNaseI
Summary
Enables deoxyribonuclease I activity. Involved in several processes, including DNA catabolic process, endonucleolytic; neutrophil activation involved in immune response; and regulation of neutrophil mediated cytotoxicity. Predicted to be located in cytoplasmic vesicle and extracellular region. Predicted to be active in nucleus. Is expressed in jejunum; metanephros; and tongue. Used to study systemic lupus erythematosus. Human ortholog(s) of this gene implicated in systemic lupus erythematosus. Orthologous to human DNASE1 (deoxyribonuclease 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in kidney adult (RPKM 666.1), duodenum adult (RPKM 123.3) and 2 other tissues See more
Orthologs
human all
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Genomic context

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Location:
16 A1; 16 2.37 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (3855007..3857888)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (4036958..4040024)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene NLR family, CARD domain containing 3 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:3976439-3976665 Neighboring gene STARR-seq mESC enhancer starr_39914 Neighboring gene SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae) Neighboring gene TNF receptor-associated protein 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:4077725-4077912 Neighboring gene CREB binding protein Neighboring gene STARR-seq mESC enhancer starr_39921 Neighboring gene RIKEN cDNA 4930455F16 gene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Targeting NETs using dual-active DNase1 variants. Englert H, et al. Front Immunol, 2023. PMID 37287977, Free PMC Article
  2. Nuclease deficiencies alter plasma cell-free DNA methylation profiles. Han DSC, et al. Genome Res, 2021 Nov. PMID 34470801, Free PMC Article
  3. Dnase1-deficient mice spontaneously develop a systemic lupus erythematosus-like disease. Kenny EF, et al. Eur J Immunol, 2019 Apr. PMID 30758851
  4. Acquired loss of renal nuclease activity is restricted to DNaseI and is an organ-selective feature in murine lupus nephritis. Seredkina N, et al. Am J Pathol, 2011 Sep. PMID 21723244, Free PMC Article
  5. Anti-dsDNA antibodies promote initiation, and acquired loss of renal Dnase1 promotes progression of lupus nephritis in autoimmune (NZBxNZW)F1 mice. Fenton K, et al. PLoS One, 2009 Dec 29. PMID 20041189, Free PMC Article

See all (57) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The protective effect of DNase I in retinal vein occlusion.
    Title: The protective effect of DNase I in retinal vein occlusion.
  2. Targeting NETs using dual-active DNase1 variants.
    Title: Targeting NETs using dual-active DNase1 variants.
  3. Epistatic effects of Siglec-G and DNase1 or DNase1l3 deficiencies in the development of systemic lupus erythematosus.
    Title: Epistatic effects of Siglec-G and DNase1 or DNase1l3 deficiencies in the development of systemic lupus erythematosus.
  4. Comparison of the secretory murine DNase1 family members expressed in Pichia pastoris.
    Title: Comparison of the secretory murine DNase1 family members expressed in Pichia pastoris.
  5. this model recapitulates the female bias seen in human SLE patients since female Dnase1-deficient mice produced the highest concentrations of autoantibodies and had more severe kidney damage than males.
    Title: Dnase1-deficient mice spontaneously develop a systemic lupus erythematosus-like disease.
  6. DNase1 and DNase1-like 3 are independently expressed and thus provide dual host protection against deleterious effects of intravascular neutrophil extracellular traps.
    Title: Host DNases prevent vascular occlusion by neutrophil extracellular traps.
  7. HMGN1 binds to CpG island-containing promoters and affects the organization of nucleosomes, DNase I hypersensitivity, and the transcriptional profile of mouse embryonic stem cells and neural progenitors.
    Title: HMGN1 modulates nucleosome occupancy and DNase I hypersensitivity at the CpG island promoters of embryonic stem cells.
  8. Early mesangial nephritis initiates a cascade of inflammatory signals that lead to up-regulation of Trap1 and a consequent down-regulation of renal DNaseI by transcriptional interference.
    Title: Impact of the tumor necrosis factor receptor-associated protein 1 (Trap1) on renal DNaseI shutdown and on progression of murine and human lupus nephritis.
  9. silencing of renal DNaseI gene expression initiates a cascade of inflammatory signals including activation of Toll like receptors and Clec4e, leading to progression of both murine and human lupus nephritis
    Title: Silencing of renal DNaseI in murine lupus nephritis imposes exposure of large chromatin fragments and activation of Toll like receptors and the Clec4e.
  10. Data show that deletion of DNaseI hypersensitive sites does not have an obvious impact on the IgH locus or B cell development.
    Title: Analysis of mice lacking DNaseI hypersensitive sites at the 5' end of the IgH locus.
Submit: New GeneRIF Correction See all GeneRIFs (22)

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Markers

Homology

Clone Names

  • MGC144446, MGC144447

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables DNA nuclease activity ISO
Inferred from Sequence Orthology
more info
  
enables actin binding IEA
Inferred from Electronic Annotation
more info
  
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
  
enables deoxyribonuclease I activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables deoxyribonuclease I activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables deoxyribonuclease I activity ISO
Inferred from Sequence Orthology
more info
  
enables endonuclease activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables nuclease activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in DNA catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in DNA catabolic process IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within apoptotic process IEA
Inferred from Electronic Annotation
more info
  
involved_in neutrophil activation involved in immune response IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in regulation of acute inflammatory response IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in regulation of neutrophil mediated cytotoxicity IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
  
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
deoxyribonuclease-1
NP_001344072.1
NP_001403712.1
NP_001403713.1
NP_034191.3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001357143.2 → NP_001344072.1  deoxyribonuclease-1 precursor

    Status: VALIDATED

    Source sequence(s)
    AC087900
    Consensus CDS
    CCDS27913.1
    UniProtKB/Swiss-Prot
    O70532, P49183
    UniProtKB/TrEMBL
    Q14BW6, Q14BW7, Q91WL7
    Related
    ENSMUSP00000113119.2, ENSMUST00000120009.8
    Conserved Domains (1) summary
    smart00476
    Location:20 → 282
    DNaseIc; deoxyribonuclease I

  2. NM_001416783.1 → NP_001403712.1  deoxyribonuclease-1 precursor

    Status: VALIDATED

    Source sequence(s)
    AC087900
    UniProtKB/Swiss-Prot
    O70532, P49183
    UniProtKB/TrEMBL
    Q14BW6

  3. NM_001416784.1 → NP_001403713.1  deoxyribonuclease-1 precursor

    Status: VALIDATED

    Source sequence(s)
    AC087900
    UniProtKB/Swiss-Prot
    O70532, P49183
    UniProtKB/TrEMBL
    Q14BW6
    Related
    ENSMUST00000125961.8

  4. NM_010061.6 → NP_034191.3  deoxyribonuclease-1 precursor

    See identical proteins and their annotated locations for NP_034191.3

    Status: VALIDATED

    Source sequence(s)
    AC087900
    Consensus CDS
    CCDS27913.1
    UniProtKB/Swiss-Prot
    O70532, P49183
    UniProtKB/TrEMBL
    Q14BW6, Q14BW7, Q91WL7
    Related
    ENSMUSP00000006136.5, ENSMUST00000006136.11
    Conserved Domains (1) summary
    smart00476
    Location:20 → 282
    DNaseIc; deoxyribonuclease I

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    3855007..3857888
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P49183.2 GenPept UniProtKB/Swiss-Prot:P49183

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