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APOBEC3A apolipoprotein B mRNA editing enzyme catalytic subunit 3A [ Pongo pygmaeus (Bornean orangutan) ]

Gene ID: 129023577, updated on 2-May-2024

Summary

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Gene symbol
APOBEC3A
Gene description
apolipoprotein B mRNA editing enzyme catalytic subunit 3A
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo pygmaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human all
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Genomic context

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Location:
chromosome: 23
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonPyg2-v2.0_pri (GCF_028885625.2) 23 NC_085931.1 (49918910..49923835)
RS_2023_04 previous assembly NHGRI_mPonPyg2-v1.1-hic.freeze_pri (GCF_028885625.1) 22 NC_072395.1 (30051056..30055962)

Chromosome 23 - NC_085931.1Genomic Context describing neighboring genes Neighboring gene chromobox 6 Neighboring gene uncharacterized LOC134739248 Neighboring gene apolipoprotein B mRNA editing enzyme catalytic subunit 3B Neighboring gene DNA dC->dU-editing enzyme APOBEC-3C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cytidine deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA cytosine deamination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA demethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytidine to uridine editing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in defense response to virus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of single stranded viral RNA replication via double stranded DNA intermediate IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA dC->dU-editing enzyme APOBEC-3A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885625.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonPyg2-v2.0_pri Primary Assembly

Genomic

  1. NC_085931.1 Reference NHGRI_mPonPyg2-v2.0_pri Primary Assembly

    Range
    49918910..49923835
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054470453.2 → XP_054326428.2  DNA dC->dU-editing enzyme APOBEC-3A

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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