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LOC127138905 hESC enhancers GRCh37_chr15:82988342-82989330 and GRCh37_chr15:83127113-83127972 [ Homo sapiens (human) ]

Gene ID: 127138905, updated on 10-Oct-2023

Summary

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Gene symbol
LOC127138905
Gene description
hESC enhancers GRCh37_chr15:82988342-82989330 and GRCh37_chr15:83127113-83127972
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region includes enhancers that were validated by the ChIP-STARR-seq massively parallel reporter assay. Two subregions had activity in naive and/or primed human embryonic stem cells, where both are marked by the H3K4me1 histone modification and one is additionally marked by H3K27ac. [provided by RefSeq, Dec 2022]
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Genomic context

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See LOC127138905 in Genome Data Viewer
Location:
chromosome: 15
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (82458385..82459390)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (80322513..80323518)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102724034 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:83114659-83115163 Neighboring gene UBE2Q2 pseudogene 6 Neighboring gene chondroitin sulfate proteoglycan 4 pseudogene 10 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:83137289-83137789 Neighboring gene GOLGA2 pseudogene 10 Neighboring gene uncharacterized LOC105370926

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

General gene information

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Other Names

  • H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:83127113-83127972
  • H3K4me1 hESC enhancer GRCh37_chr15:82988342-82989330

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_088568.2 

    Range
    101..1106
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    82458385..82459390
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    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187606.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    247468..248473
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    80322513..80323518
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    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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