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ATF2 activating transcription factor 2 [ Varanus komodoensis (Komodo dragon) ]

Gene ID: 123021813, updated on 22-Mar-2024

Summary

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Gene symbol
ATF2
Gene description
activating transcription factor 2
Locus tag
EYD10_08739
See related
Ensembl:ENSVKKG00000001956
Gene type
protein coding
RefSeq status
MODEL
Organism
Varanus komodoensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Anguimorpha; Paleoanguimorpha; Varanoidea; Varanidae; Varanus
Also known as
ATF2_0; ATF2_1
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current ASM479886v1 (GCF_004798865.1) Unplaced Scaffold NW_025335548.1 (321809..378051, complement)

NW_025335548.1Genomic Context describing neighboring genes Neighboring gene cholinergic receptor nicotinic alpha 1 subunit Neighboring gene chimerin 1 Neighboring gene ATP synthase membrane subunit c locus 3 Neighboring gene lunapark, ER junction formation factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_025335548 Unplaced Scaffold Reference ASM479886v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cAMP response element binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cyclic AMP-dependent transcription factor ATF-2
Names
Cyclic AMP-dependent transcription factor ATF-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Varanus komodoensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM479886v1

Genomic

  1. NW_025335548.1 Reference ASM479886v1

    Range
    321809..378051 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044426959.1 → XP_044282894.1  cyclic AMP-dependent transcription factor ATF-2 isoform X2

    UniProtKB/TrEMBL
    A0A8D2IU97
    Conserved Domains (2) summary
    cd12192
    Location:8 → 44
    GCN4_cent; GCN4 central activation domain-like acidic activation domain
    cd14687
    Location:315 → 375
    bZIP_ATF2; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-2 (ATF-2) and similar proteins: a DNA-binding and dimerization domain

  2. XM_044426957.1 → XP_044282892.1  cyclic AMP-dependent transcription factor ATF-2 isoform X1

    UniProtKB/TrEMBL
    A0A8D2IU97
    Conserved Domains (3) summary
    cd12192
    Location:47 → 84
    GCN4_cent; GCN4 central activation domain-like acidic activation domain
    cd14687
    Location:355 → 415
    bZIP_ATF2; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-2 (ATF-2) and similar proteins: a DNA-binding and dimerization domain
    sd00019
    Location:9 → 31
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_044426958.1 → XP_044282893.1  cyclic AMP-dependent transcription factor ATF-2 isoform X1

    UniProtKB/TrEMBL
    A0A8D2IU97
    Related
    ENSVKKP00000002446.1, ENSVKKT00000002519.1
    Conserved Domains (3) summary
    cd12192
    Location:47 → 84
    GCN4_cent; GCN4 central activation domain-like acidic activation domain
    cd14687
    Location:355 → 415
    bZIP_ATF2; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-2 (ATF-2) and similar proteins: a DNA-binding and dimerization domain
    sd00019
    Location:9 → 31
    ZF_C2H2; C2H2 Zn finger [structural motif]

  4. XM_044426956.1 → XP_044282891.1  cyclic AMP-dependent transcription factor ATF-2 isoform X1

    UniProtKB/TrEMBL
    A0A8D2IU97
    Conserved Domains (3) summary
    cd12192
    Location:47 → 84
    GCN4_cent; GCN4 central activation domain-like acidic activation domain
    cd14687
    Location:355 → 415
    bZIP_ATF2; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-2 (ATF-2) and similar proteins: a DNA-binding and dimerization domain
    sd00019
    Location:9 → 31
    ZF_C2H2; C2H2 Zn finger [structural motif]

  5. XM_044426955.1 → XP_044282890.1  cyclic AMP-dependent transcription factor ATF-2 isoform X1

    UniProtKB/TrEMBL
    A0A8D2IU97
    Conserved Domains (3) summary
    cd12192
    Location:47 → 84
    GCN4_cent; GCN4 central activation domain-like acidic activation domain
    cd14687
    Location:355 → 415
    bZIP_ATF2; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-2 (ATF-2) and similar proteins: a DNA-binding and dimerization domain
    sd00019
    Location:9 → 31
    ZF_C2H2; C2H2 Zn finger [structural motif]

  6. XM_044426954.1 → XP_044282889.1  cyclic AMP-dependent transcription factor ATF-2 isoform X1

    UniProtKB/TrEMBL
    A0A8D2IU97
    Conserved Domains (3) summary
    cd12192
    Location:47 → 84
    GCN4_cent; GCN4 central activation domain-like acidic activation domain
    cd14687
    Location:355 → 415
    bZIP_ATF2; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-2 (ATF-2) and similar proteins: a DNA-binding and dimerization domain
    sd00019
    Location:9 → 31
    ZF_C2H2; C2H2 Zn finger [structural motif]

  7. XM_044426960.1 → XP_044282895.1  cyclic AMP-dependent transcription factor ATF-2 isoform X3

    UniProtKB/TrEMBL
    A0A8D2IU97
    Conserved Domains (3) summary
    cd12192
    Location:8 → 44
    GCN4_cent; GCN4 central activation domain-like acidic activation domain
    cd14687
    Location:296 → 356
    bZIP_ATF2; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-2 (ATF-2) and similar proteins: a DNA-binding and dimerization domain
    cl26244
    Location:216 → 286
    VSG_B; Trypanosomal VSG domain

  8. XM_044426961.1 → XP_044282896.1  cyclic AMP-dependent transcription factor ATF-2 isoform X4

    UniProtKB/TrEMBL
    A0A8D2IU97
    Conserved Domains (2) summary
    cd14687
    Location:267 → 327
    bZIP_ATF2; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-2 (ATF-2) and similar proteins: a DNA-binding and dimerization domain
    cl26244
    Location:185 → 257
    VSG_B; Trypanosomal VSG domain
Nucleotide Protein
Heading Accession and Version

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