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ARID4B AT-rich interaction domain 4B [ Varanus komodoensis (Komodo dragon) ]

Gene ID: 123018242, updated on 22-Mar-2024

Summary

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Gene symbol
ARID4B
Gene description
AT-rich interaction domain 4B
Locus tag
EYD10_00314
See related
Ensembl:ENSVKKG00000017327
Gene type
protein coding
RefSeq status
MODEL
Organism
Varanus komodoensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Anguimorpha; Paleoanguimorpha; Varanoidea; Varanidae; Varanus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
100 current ASM479886v1 (GCF_004798865.1) Unplaced Scaffold NW_025335268.1 (25553576..25674547)

NW_025335268.1Genomic Context describing neighboring genes Neighboring gene tubulin folding cofactor E Neighboring gene geranylgeranyl diphosphate synthase 1 Neighboring gene RNA binding motif protein 34 Neighboring gene small nucleolar RNA SNORA14 Neighboring gene translocase of outer mitochondrial membrane 20

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_025335268 Unplaced Scaffold Reference ASM479886v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AT-rich interactive domain-containing protein 4B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Varanus komodoensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM479886v1

Genomic

  1. NW_025335268.1 Reference ASM479886v1

    Range
    25553576..25674547
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044420111.1 → XP_044276046.1  AT-rich interactive domain-containing protein 4B isoform X1

    UniProtKB/TrEMBL
    A0A8D2LS10
    Conserved Domains (4) summary
    smart00333
    Location:58 → 113
    TUDOR; Tudor domain
    COG5027
    Location:572 → 692
    SAS2; Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
    cd16883
    Location:303 → 394
    ARID_ARID4B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4B (ARID4B) and similar proteins
    cl28914
    Location:562 → 619
    CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains

  2. XM_044420103.1 → XP_044276038.1  AT-rich interactive domain-containing protein 4B isoform X1

    UniProtKB/TrEMBL
    A0A8D2LS10
    Related
    ENSVKKP00000026574.1, ENSVKKT00000027224.1
    Conserved Domains (4) summary
    smart00333
    Location:58 → 113
    TUDOR; Tudor domain
    COG5027
    Location:572 → 692
    SAS2; Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
    cd16883
    Location:303 → 394
    ARID_ARID4B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4B (ARID4B) and similar proteins
    cl28914
    Location:562 → 619
    CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains

  3. XM_044420119.1 → XP_044276054.1  AT-rich interactive domain-containing protein 4B isoform X2

    UniProtKB/TrEMBL
    A0A8D2LUK9
    Related
    ENSVKKP00000026575.1, ENSVKKT00000027225.1
    Conserved Domains (4) summary
    smart00333
    Location:58 → 113
    TUDOR; Tudor domain
    COG5027
    Location:572 → 692
    SAS2; Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
    cd16883
    Location:303 → 394
    ARID_ARID4B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4B (ARID4B) and similar proteins
    cl28914
    Location:562 → 619
    CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains

  4. XM_044420125.1 → XP_044276060.1  AT-rich interactive domain-containing protein 4B isoform X3

    UniProtKB/TrEMBL
    A0A8D2LTJ6
    Related
    ENSVKKP00000026577.1, ENSVKKT00000027227.1
    Conserved Domains (4) summary
    PTZ00121
    Location:406 → 871
    PTZ00121; MAEBL; Provisional
    pfam05279
    Location:403 → 576
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    smart00333
    Location:58 → 113
    TUDOR; Tudor domain
    cd16883
    Location:303 → 394
    ARID_ARID4B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4B (ARID4B) and similar proteins
Nucleotide Protein
Heading Accession and Version

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