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ARID4B AT-rich interaction domain 4B [ Cervus elaphus (red deer) ]

Gene ID: 122708638, updated on 22-Mar-2024

Summary

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Gene symbol
ARID4B
Gene description
AT-rich interaction domain 4B
See related
EnsemblRapid:ENSCESG00005009571
Gene type
protein coding
RefSeq status
MODEL
Organism
Cervus elaphus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Cervidae; Cervinae; Cervus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 15
Exon count:
25
Annotation release Status Assembly Chr Location
100 current mCerEla1.1 (GCF_910594005.1) 15 NC_057829.1 (6382879..6517194)

Chromosome 15 - NC_057829.1Genomic Context describing neighboring genes Neighboring gene tubulin folding cofactor E Neighboring gene U6 spliceosomal RNA Neighboring gene geranylgeranyl diphosphate synthase 1 Neighboring gene small nucleolar RNA SNORA14 Neighboring gene RNA binding motif protein 34 Neighboring gene translocase of outer mitochondrial membrane 20

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_057829.1 Chromosome 15 Reference mCerEla1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AT-rich interactive domain-containing protein 4B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cervus elaphus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCerEla1.1

Genomic

  1. NC_057829.1 Reference mCerEla1.1

    Range
    6382879..6517194
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043924937.1 → XP_043780872.1  AT-rich interactive domain-containing protein 4B isoform X1

    Related
    ENSCESP00005012647.1, ENSCEST00005014941.1
    Conserved Domains (5) summary
    pfam05539
    Location:972 → 1126
    Pneumo_att_G; Pneumovirinae attachment membrane glycoprotein G
    smart00333
    Location:58 → 113
    TUDOR; Tudor domain
    COG5027
    Location:582 → 680
    SAS2; Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
    cd16883
    Location:308 → 399
    ARID_ARID4B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4B (ARID4B) and similar proteins
    cl28914
    Location:572 → 629
    CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains

  2. XM_043924941.1 → XP_043780876.1  AT-rich interactive domain-containing protein 4B isoform X4

    Conserved Domains (3) summary
    pfam05539
    Location:936 → 1090
    Pneumo_att_G; Pneumovirinae attachment membrane glycoprotein G
    smart00333
    Location:58 → 113
    TUDOR; Tudor domain
    cd16883
    Location:308 → 399
    ARID_ARID4B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4B (ARID4B) and similar proteins

  3. XM_043924939.1 → XP_043780874.1  AT-rich interactive domain-containing protein 4B isoform X2

    Related
    ENSCESP00005012651.1, ENSCEST00005014948.1
    Conserved Domains (5) summary
    pfam05539
    Location:958 → 1112
    Pneumo_att_G; Pneumovirinae attachment membrane glycoprotein G
    smart00333
    Location:58 → 113
    TUDOR; Tudor domain
    COG5027
    Location:568 → 666
    SAS2; Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
    cd16883
    Location:308 → 399
    ARID_ARID4B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4B (ARID4B) and similar proteins
    cl28914
    Location:558 → 615
    CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains

  4. XM_043924943.1 → XP_043780878.1  AT-rich interactive domain-containing protein 4B isoform X5

    Related
    ENSCESP00005012641.1, ENSCEST00005014934.1
    Conserved Domains (4) summary
    pfam05539
    Location:887 → 1041
    Pneumo_att_G; Pneumovirinae attachment membrane glycoprotein G
    PTZ00121
    Location:418 → 765
    PTZ00121; MAEBL; Provisional
    smart00333
    Location:58 → 113
    TUDOR; Tudor domain
    cd16883
    Location:308 → 399
    ARID_ARID4B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4B (ARID4B) and similar proteins

  5. XM_043924940.1 → XP_043780875.1  AT-rich interactive domain-containing protein 4B isoform X3

    Conserved Domains (5) summary
    pfam05539
    Location:956 → 1110
    Pneumo_att_G; Pneumovirinae attachment membrane glycoprotein G
    smart00333
    Location:58 → 113
    TUDOR; Tudor domain
    COG5027
    Location:566 → 664
    SAS2; Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
    cd16883
    Location:308 → 399
    ARID_ARID4B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4B (ARID4B) and similar proteins
    cl28914
    Location:556 → 613
    CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains

  6. XM_043924938.1 → XP_043780873.1  AT-rich interactive domain-containing protein 4B isoform X1

    Conserved Domains (5) summary
    pfam05539
    Location:972 → 1126
    Pneumo_att_G; Pneumovirinae attachment membrane glycoprotein G
    smart00333
    Location:58 → 113
    TUDOR; Tudor domain
    COG5027
    Location:582 → 680
    SAS2; Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
    cd16883
    Location:308 → 399
    ARID_ARID4B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4B (ARID4B) and similar proteins
    cl28914
    Location:572 → 629
    CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains

RNA

  1. XR_006345236.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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