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adamts17 ADAM metallopeptidase with thrombospondin type 1 motif, 17 [ Polypterus senegalus (gray bichir) ]

Gene ID: 120541252, updated on 8-May-2024

Summary

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Gene symbol
adamts17
Gene description
ADAM metallopeptidase with thrombospondin type 1 motif, 17
Locus tag
GTO96_0005928
See related
EnsemblRapid:ENSSTSG00000011994
Gene type
protein coding
RefSeq status
MODEL
Organism
Polypterus senegalus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Polypteriformes; Polypteridae; Polypterus
Also known as
Adamts17_0; Adamts17_1
Orthologs
human zebrafish all
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Genomic context

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See adamts17 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
24
Annotation release Status Assembly Chr Location
100 current ASM1683550v1 (GCF_016835505.1) 12 NC_053165.1 (84323025..84499793)

Chromosome 12 - NC_053165.1Genomic Context describing neighboring genes Neighboring gene lines homolog 1 Neighboring gene ceramide synthase 3a Neighboring gene membrane integral NOTCH2 associated receptor 1 Neighboring gene 5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053165.1 Chromosome 12 Reference ASM1683550v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
A disintegrin and metalloproteinase with thrombospondin motifs 17
Names
ATS17 metalloproteinase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Polypterus senegalus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1683550v1 Primary Assembly

Genomic

  1. NC_053165.1 Reference ASM1683550v1 Primary Assembly

    Range
    84323025..84499793
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039772720.1 → XP_039628654.1  A disintegrin and metalloproteinase with thrombospondin motifs 17 isoform X1

    Related
    ENSSTSP00000026564.1, ENSSTST00000030303.1
    Conserved Domains (3) summary
    smart00209
    Location:545 → 596
    TSP1; Thrombospondin type 1 repeats
    cd04273
    Location:231 → 448
    ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
    pfam05986
    Location:699 → 808
    ADAM_spacer1; ADAM-TS Spacer 1

  2. XM_039772721.1 → XP_039628655.1  A disintegrin and metalloproteinase with thrombospondin motifs 17 isoform X2

    Conserved Domains (3) summary
    smart00209
    Location:545 → 596
    TSP1; Thrombospondin type 1 repeats
    cd04273
    Location:231 → 448
    ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
    pfam05986
    Location:699 → 808
    ADAM_spacer1; ADAM-TS Spacer 1
Nucleotide Protein
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