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ankhd1 ankyrin repeat and KH domain containing 1 [ Micropterus salmoides (largemouth bass) ]

Gene ID: 119888769, updated on 21-Mar-2024

Summary

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Gene symbol
ankhd1
Gene description
ankyrin repeat and KH domain containing 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Micropterus salmoides
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Centrarchidae; Micropterus
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
39
Annotation release Status Assembly Chr Location
100 current ASM1485139v1 (GCF_014851395.1) Unplaced Scaffold NW_024044237.1 (13738622..13768272)

NW_024044237.1Genomic Context describing neighboring genes Neighboring gene RUN and FYVE domain containing 1 Neighboring gene heterogeneous nuclear ribonucleoprotein H1 Neighboring gene HIG1 hypoxia inducible domain family, member 2A Neighboring gene clathrin, light chain B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024044237 Unplaced Scaffold Reference ASM1485139v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ankyrin repeat and KH domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Micropterus salmoides Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1485139v1 Primary Assembly

Genomic

  1. NW_024044237.1 Reference ASM1485139v1 Primary Assembly

    Range
    13738622..13768272
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038699485.1 → XP_038555413.1  ankyrin repeat and KH domain-containing protein 1 isoform X1

    Conserved Domains (10) summary
    smart00248
    Location:1122 → 1150
    ANK; ankyrin repeats
    PHA03095
    Location:207 → 529
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1880 → 2265
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:781 → 873
    PRK03918; DNA double-strand break repair ATPase Rad50
    PRK14950
    Location:692 → 775
    PRK14950; DNA polymerase III subunits gamma and tau; Provisional
    sd00045
    Location:535 → 563
    ANK; ANK repeat [structural motif]
    pfam03154
    Location:2024 → 2523
    Atrophin-1; Atrophin-1 family
    pfam12796
    Location:537 → 627
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1801 → 1883
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1362 → 1514
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

  2. XM_038699486.1 → XP_038555414.1  ankyrin repeat and KH domain-containing protein 1 isoform X2

    Conserved Domains (9) summary
    smart00248
    Location:1121 → 1149
    ANK; ankyrin repeats
    PHA03095
    Location:207 → 529
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1879 → 2264
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:780 → 872
    PRK03918; DNA double-strand break repair ATPase Rad50
    sd00045
    Location:402 → 433
    ANK; ANK repeat [structural motif]
    pfam03154
    Location:2023 → 2522
    Atrophin-1; Atrophin-1 family
    pfam12796
    Location:537 → 627
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1800 → 1882
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1361 → 1513
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

  3. XM_038699487.1 → XP_038555415.1  ankyrin repeat and KH domain-containing protein 1 isoform X3

    Conserved Domains (10) summary
    smart00248
    Location:1120 → 1148
    ANK; ankyrin repeats
    PHA03095
    Location:207 → 527
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1878 → 2263
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:779 → 871
    PRK03918; DNA double-strand break repair ATPase Rad50
    PRK14950
    Location:690 → 773
    PRK14950; DNA polymerase III subunits gamma and tau; Provisional
    sd00045
    Location:402 → 431
    ANK; ANK repeat [structural motif]
    pfam03154
    Location:2022 → 2521
    Atrophin-1; Atrophin-1 family
    pfam12796
    Location:535 → 625
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1799 → 1881
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1360 → 1512
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

  4. XM_038699488.1 → XP_038555416.1  ankyrin repeat and KH domain-containing protein 1 isoform X4

    Conserved Domains (10) summary
    smart00248
    Location:1117 → 1145
    ANK; ankyrin repeats
    PHA03095
    Location:202 → 524
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1875 → 2260
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:776 → 868
    PRK03918; DNA double-strand break repair ATPase Rad50
    PRK14950
    Location:687 → 770
    PRK14950; DNA polymerase III subunits gamma and tau; Provisional
    sd00045
    Location:530 → 558
    ANK; ANK repeat [structural motif]
    pfam03154
    Location:2019 → 2518
    Atrophin-1; Atrophin-1 family
    pfam12796
    Location:532 → 622
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1796 → 1878
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1357 → 1509
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

  5. XM_038699489.1 → XP_038555417.1  ankyrin repeat and KH domain-containing protein 1 isoform X5

    Conserved Domains (10) summary
    smart00248
    Location:1115 → 1143
    ANK; ankyrin repeats
    PHA03095
    Location:202 → 522
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1873 → 2258
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:774 → 866
    PRK03918; DNA double-strand break repair ATPase Rad50
    PRK14950
    Location:685 → 768
    PRK14950; DNA polymerase III subunits gamma and tau; Provisional
    sd00045
    Location:397 → 426
    ANK; ANK repeat [structural motif]
    pfam03154
    Location:2017 → 2516
    Atrophin-1; Atrophin-1 family
    pfam12796
    Location:530 → 620
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1794 → 1876
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1355 → 1507
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

  6. XM_038699490.1 → XP_038555418.1  ankyrin repeat and KH domain-containing protein 1 isoform X6

    Conserved Domains (10) summary
    smart00248
    Location:1082 → 1110
    ANK; ankyrin repeats
    PHA03095
    Location:167 → 489
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1840 → 2225
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:741 → 833
    PRK03918; DNA double-strand break repair ATPase Rad50
    PRK14950
    Location:652 → 735
    PRK14950; DNA polymerase III subunits gamma and tau; Provisional
    sd00045
    Location:362 → 393
    ANK; ANK repeat [structural motif]
    pfam03154
    Location:1984 → 2483
    Atrophin-1; Atrophin-1 family
    pfam12796
    Location:497 → 587
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1761 → 1843
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1322 → 1474
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)
Nucleotide Protein
Heading Accession and Version

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