U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ankhd1 ankyrin repeat and KH domain containing 1 [ Cyprinodon tularosa ]

Gene ID: 119783211, updated on 21-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
ankhd1
Gene description
ankyrin repeat and KH domain containing 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon tularosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Orthologs
zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
40
Annotation release Status Assembly Chr Location
100 current ASM1607723v1 (GCF_016077235.1) Unplaced Scaffold NW_024038734.1 (1047577..1101111, complement)

NW_024038734.1Genomic Context describing neighboring genes Neighboring gene clathrin, light chain B Neighboring gene HIG1 hypoxia inducible domain family, member 2A Neighboring gene heterogeneous nuclear ribonucleoprotein H-like Neighboring gene RUN and FYVE domain containing 1

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_024038734 Unplaced Scaffold Reference ASM1607723v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
ankyrin repeat and KH domain-containing protein 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Cyprinodon tularosa Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1607723v1

Genomic

  1. NW_024038734.1 Reference ASM1607723v1

    Range
    1047577..1101111 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038284592.1 → XP_038140520.1  ankyrin repeat and KH domain-containing protein 1 isoform X9

    Conserved Domains (8) summary
    smart00248
    Location:1106 → 1134
    ANK; ankyrin repeats
    PHA03095
    Location:195 → 517
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1966 → 2249
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:768 → 863
    PRK03918; DNA double-strand break repair ATPase Rad50
    sd00045
    Location:390 → 421
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:525 → 615
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1786 → 1868
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1346 → 1498
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

  2. XM_038284586.1 → XP_038140514.1  ankyrin repeat and KH domain-containing protein 1 isoform X3

    Conserved Domains (8) summary
    smart00248
    Location:1117 → 1145
    ANK; ankyrin repeats
    PHA03095
    Location:206 → 528
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1977 → 2260
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:779 → 874
    PRK03918; DNA double-strand break repair ATPase Rad50
    sd00045
    Location:401 → 432
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:536 → 626
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1797 → 1879
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1357 → 1509
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

  3. XM_038284588.1 → XP_038140516.1  ankyrin repeat and KH domain-containing protein 1 isoform X5

    Conserved Domains (8) summary
    smart00248
    Location:1114 → 1142
    ANK; ankyrin repeats
    PHA03095
    Location:203 → 525
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1974 → 2257
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:776 → 871
    PRK03918; DNA double-strand break repair ATPase Rad50
    sd00045
    Location:398 → 429
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:533 → 623
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1794 → 1876
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1354 → 1506
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

  4. XM_038284596.1 → XP_038140524.1  ankyrin repeat and KH domain-containing protein 1 isoform X12

    Conserved Domains (8) summary
    smart00248
    Location:1072 → 1100
    ANK; ankyrin repeats
    PHA03095
    Location:161 → 483
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1932 → 2215
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:734 → 829
    PRK03918; DNA double-strand break repair ATPase Rad50
    sd00045
    Location:356 → 387
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:491 → 581
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1752 → 1834
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1312 → 1464
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

  5. XM_038284595.1 → XP_038140523.1  ankyrin repeat and KH domain-containing protein 1 isoform X11

    Conserved Domains (8) summary
    smart00248
    Location:1099 → 1127
    ANK; ankyrin repeats
    PHA03095
    Location:1114 → 1401
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1959 → 2242
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:761 → 856
    PRK03918; DNA double-strand break repair ATPase Rad50
    sd00045
    Location:385 → 414
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:518 → 608
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1779 → 1861
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1339 → 1491
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

  6. XM_038284594.1 → XP_038140522.1  ankyrin repeat and KH domain-containing protein 1 isoform X10

    Conserved Domains (8) summary
    smart00248
    Location:1101 → 1129
    ANK; ankyrin repeats
    PHA03095
    Location:190 → 512
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1961 → 2244
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:763 → 858
    PRK03918; DNA double-strand break repair ATPase Rad50
    sd00045
    Location:385 → 416
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:520 → 610
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1781 → 1863
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1341 → 1493
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

  7. XM_038284597.1 → XP_038140525.1  ankyrin repeat and KH domain-containing protein 1 isoform X13

    Conserved Domains (8) summary
    smart00248
    Location:1110 → 1138
    ANK; ankyrin repeats
    PHA03095
    Location:1125 → 1412
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1970 → 2253
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:772 → 867
    PRK03918; DNA double-strand break repair ATPase Rad50
    sd00045
    Location:396 → 425
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:529 → 619
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1790 → 1872
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1350 → 1502
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

  8. XM_038284599.1 → XP_038140527.1  ankyrin repeat and KH domain-containing protein 1 isoform X15

    Conserved Domains (8) summary
    smart00248
    Location:1110 → 1138
    ANK; ankyrin repeats
    PHA03095
    Location:1125 → 1412
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1970 → 2253
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:772 → 867
    PRK03918; DNA double-strand break repair ATPase Rad50
    sd00045
    Location:396 → 425
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:529 → 619
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1790 → 1872
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1350 → 1502
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

  9. XM_038284590.1 → XP_038140518.1  ankyrin repeat and KH domain-containing protein 1 isoform X7

    Conserved Domains (8) summary
    smart00248
    Location:1110 → 1138
    ANK; ankyrin repeats
    PHA03095
    Location:1125 → 1412
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1970 → 2253
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:772 → 867
    PRK03918; DNA double-strand break repair ATPase Rad50
    sd00045
    Location:396 → 425
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:529 → 619
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1790 → 1872
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1350 → 1502
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

  10. XM_038284589.1 → XP_038140517.1  ankyrin repeat and KH domain-containing protein 1 isoform X6

    Conserved Domains (8) summary
    smart00248
    Location:1112 → 1140
    ANK; ankyrin repeats
    PHA03095
    Location:201 → 523
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1972 → 2255
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:774 → 869
    PRK03918; DNA double-strand break repair ATPase Rad50
    sd00045
    Location:396 → 427
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:531 → 621
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1792 → 1874
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1352 → 1504
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

  11. XM_038284598.1 → XP_038140526.1  ankyrin repeat and KH domain-containing protein 1 isoform X14

    Conserved Domains (8) summary
    smart00248
    Location:1115 → 1143
    ANK; ankyrin repeats
    PHA03095
    Location:1130 → 1417
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1975 → 2258
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:777 → 872
    PRK03918; DNA double-strand break repair ATPase Rad50
    sd00045
    Location:401 → 430
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:534 → 624
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1795 → 1877
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1355 → 1507
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

  12. XM_038284587.1 → XP_038140515.1  ankyrin repeat and KH domain-containing protein 1 isoform X4

    Conserved Domains (8) summary
    smart00248
    Location:1115 → 1143
    ANK; ankyrin repeats
    PHA03095
    Location:1130 → 1417
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1975 → 2258
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:777 → 872
    PRK03918; DNA double-strand break repair ATPase Rad50
    sd00045
    Location:401 → 430
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:534 → 624
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1795 → 1877
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1355 → 1507
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

  13. XM_038284585.1 → XP_038140513.1  ankyrin repeat and KH domain-containing protein 1 isoform X2

    Conserved Domains (8) summary
    smart00248
    Location:1117 → 1145
    ANK; ankyrin repeats
    PHA03095
    Location:206 → 528
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1977 → 2260
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:779 → 874
    PRK03918; DNA double-strand break repair ATPase Rad50
    sd00045
    Location:401 → 432
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:536 → 626
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1797 → 1879
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1357 → 1509
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

  14. XM_038284584.1 → XP_038140512.1  ankyrin repeat and KH domain-containing protein 1 isoform X1

    Conserved Domains (8) summary
    smart00248
    Location:1117 → 1145
    ANK; ankyrin repeats
    PHA03095
    Location:206 → 528
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1977 → 2260
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:779 → 874
    PRK03918; DNA double-strand break repair ATPase Rad50
    sd00045
    Location:401 → 432
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:536 → 626
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1797 → 1879
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1357 → 1509
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

  15. XM_038284591.1 → XP_038140519.1  ankyrin repeat and KH domain-containing protein 1 isoform X8

    Conserved Domains (8) summary
    smart00248
    Location:1109 → 1137
    ANK; ankyrin repeats
    PHA03095
    Location:198 → 520
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1969 → 2252
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:771 → 866
    PRK03918; DNA double-strand break repair ATPase Rad50
    sd00045
    Location:526 → 554
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:528 → 618
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1789 → 1871
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1349 → 1501
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.