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cltb clathrin, light chain B [ Acanthopagrus latus (yellowfin seabream) ]

Gene ID: 119007593, updated on 21-Mar-2024

Summary

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Gene symbol
cltb
Gene description
clathrin, light chain B
See related
EnsemblRapid:ENSALTG00010016533
Gene type
protein coding
RefSeq status
MODEL
Organism
Acanthopagrus latus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Spariformes; Sparidae; Acanthopagrus
Orthologs
human zebrafish all
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Genomic context

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See cltb in Genome Data Viewer
Location:
chromosome: 18
Exon count:
8
Annotation release Status Assembly Chr Location
100 current fAcaLat1.1 (GCF_904848185.1) 18 NC_051056.1 (16437774..16442150, complement)

Chromosome 18 - NC_051056.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat and KH domain containing 1 Neighboring gene HIG1 hypoxia inducible domain family, member 2A Neighboring gene PDZ and LIM domain 7 Neighboring gene unc-5 netrin receptor A Neighboring gene uncharacterized LOC119007017

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_051056.1 Chromosome 18 Reference fAcaLat1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables clathrin heavy chain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in clathrin coat assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in clathrin-dependent endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of clathrin coat of coated pit IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of clathrin coat of trans-Golgi network vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic endocytic zone cytoplasmic component IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
clathrin light chain B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Acanthopagrus latus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAcaLat1.1 Primary Assembly

Genomic

  1. NC_051056.1 Reference fAcaLat1.1 Primary Assembly

    Range
    16437774..16442150 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037077372.1 → XP_036933267.1  clathrin light chain B isoform X1

    Conserved Domains (1) summary
    pfam01086
    Location:2 → 224
    Clathrin_lg_ch; Clathrin light chain

  2. XM_037077371.1 → XP_036933266.1  clathrin light chain B isoform X1

    Conserved Domains (1) summary
    pfam01086
    Location:2 → 224
    Clathrin_lg_ch; Clathrin light chain

  3. XM_037077374.1 → XP_036933269.1  clathrin light chain B isoform X2

    Related
    ENSALTP00010044429.1, ENSALTT00010047640.1
    Conserved Domains (1) summary
    pfam01086
    Location:2 → 217
    Clathrin_lg_ch; Clathrin light chain

  4. XM_037077375.1 → XP_036933270.1  clathrin light chain B isoform X3

    Related
    ENSALTP00010044436.1, ENSALTT00010047647.1
    Conserved Domains (1) summary
    pfam01086
    Location:2 → 206
    Clathrin_lg_ch; Clathrin light chain

  5. XM_037077376.1 → XP_036933271.1  clathrin light chain B isoform X4

    Related
    ENSALTP00010044439.1, ENSALTT00010047650.1
    Conserved Domains (1) summary
    pfam01086
    Location:2 → 199
    Clathrin_lg_ch; Clathrin light chain
Nucleotide Protein
Heading Accession and Version

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