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ankhd1 ankyrin repeat and KH domain containing 1 [ Acanthopagrus latus (yellowfin seabream) ]

Gene ID: 119007117, updated on 21-Mar-2024

Summary

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Gene symbol
ankhd1
Gene description
ankyrin repeat and KH domain containing 1
See related
EnsemblRapid:ENSALTG00010020031
Gene type
protein coding
RefSeq status
MODEL
Organism
Acanthopagrus latus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Spariformes; Sparidae; Acanthopagrus
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 18
Exon count:
39
Annotation release Status Assembly Chr Location
100 current fAcaLat1.1 (GCF_904848185.1) 18 NC_051056.1 (16409335..16433583)

Chromosome 18 - NC_051056.1Genomic Context describing neighboring genes Neighboring gene RUN and FYVE domain containing 1 Neighboring gene heterogeneous nuclear ribonucleoprotein H1 Neighboring gene HIG1 hypoxia inducible domain family, member 2A Neighboring gene clathrin, light chain B

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_051056.1 Chromosome 18 Reference fAcaLat1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ankyrin repeat and KH domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Acanthopagrus latus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAcaLat1.1 Primary Assembly

Genomic

  1. NC_051056.1 Reference fAcaLat1.1 Primary Assembly

    Range
    16409335..16433583
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037076506.1 → XP_036932401.1  ankyrin repeat and KH domain-containing protein 1 isoform X1

    Conserved Domains (10) summary
    smart00248
    Location:1119 → 1147
    ANK; ankyrin repeats
    PHA03095
    Location:207 → 529
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:2051 → 2508
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:781 → 873
    PRK03918; DNA double-strand break repair ATPase Rad50
    PRK14950
    Location:692 → 775
    PRK14950; DNA polymerase III subunits gamma and tau; Provisional
    pfam05109
    Location:2026 → 2262
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:402 → 433
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:537 → 627
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1797 → 1879
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1359 → 1511
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

  2. XM_037076512.1 → XP_036932407.1  ankyrin repeat and KH domain-containing protein 1 isoform X6

    Conserved Domains (10) summary
    smart00248
    Location:1119 → 1147
    ANK; ankyrin repeats
    PHA03095
    Location:207 → 529
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1990 → 2447
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:781 → 873
    PRK03918; DNA double-strand break repair ATPase Rad50
    PRK14950
    Location:692 → 775
    PRK14950; DNA polymerase III subunits gamma and tau; Provisional
    pfam05109
    Location:1965 → 2201
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:402 → 433
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:537 → 627
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1736 → 1818
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1359 → 1511
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

  3. XM_037076508.1 → XP_036932403.1  ankyrin repeat and KH domain-containing protein 1 isoform X3

    Conserved Domains (10) summary
    smart00248
    Location:1117 → 1145
    ANK; ankyrin repeats
    PHA03095
    Location:207 → 529
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:2049 → 2506
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:787 → 873
    PRK03918; DNA double-strand break repair ATPase Rad50
    PRK14950
    Location:692 → 775
    PRK14950; DNA polymerase III subunits gamma and tau; Provisional
    pfam05109
    Location:2024 → 2260
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:402 → 433
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:537 → 627
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1795 → 1877
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1357 → 1509
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

  4. XM_037076507.1 → XP_036932402.1  ankyrin repeat and KH domain-containing protein 1 isoform X2

    Related
    ENSALTP00010055554.1, ENSALTT00010059870.1
    Conserved Domains (10) summary
    smart00248
    Location:1117 → 1145
    ANK; ankyrin repeats
    PHA03095
    Location:207 → 527
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:2049 → 2506
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:779 → 871
    PRK03918; DNA double-strand break repair ATPase Rad50
    PRK14950
    Location:690 → 773
    PRK14950; DNA polymerase III subunits gamma and tau; Provisional
    pfam05109
    Location:2024 → 2260
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:402 → 431
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:535 → 625
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1795 → 1877
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1357 → 1509
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

  5. XM_037076510.1 → XP_036932405.1  ankyrin repeat and KH domain-containing protein 1 isoform X4

    Conserved Domains (10) summary
    smart00248
    Location:1114 → 1142
    ANK; ankyrin repeats
    PHA03095
    Location:202 → 524
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:2046 → 2503
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:776 → 868
    PRK03918; DNA double-strand break repair ATPase Rad50
    PRK14950
    Location:687 → 770
    PRK14950; DNA polymerase III subunits gamma and tau; Provisional
    pfam05109
    Location:2021 → 2257
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:397 → 428
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:532 → 622
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1792 → 1874
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1354 → 1506
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

  6. XM_037076511.1 → XP_036932406.1  ankyrin repeat and KH domain-containing protein 1 isoform X5

    Related
    ENSALTP00010055296.1, ENSALTT00010059611.1
    Conserved Domains (10) summary
    smart00248
    Location:1112 → 1140
    ANK; ankyrin repeats
    PHA03095
    Location:202 → 522
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:2044 → 2501
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:774 → 866
    PRK03918; DNA double-strand break repair ATPase Rad50
    PRK14950
    Location:685 → 768
    PRK14950; DNA polymerase III subunits gamma and tau; Provisional
    pfam05109
    Location:2019 → 2255
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:397 → 426
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:530 → 620
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1790 → 1872
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1352 → 1504
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)
Nucleotide Protein
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