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ankhd1 ankyrin repeat and KH domain containing 1 [ Colossoma macropomum (tambaqui) ]

Gene ID: 118820674, updated on 20-Mar-2024

Summary

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Gene symbol
ankhd1
Gene description
ankyrin repeat and KH domain containing 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Colossoma macropomum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Colossoma
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
35
Annotation release Status Assembly Chr Location
100 current Colossoma_macropomum (GCF_904425465.1) Unplaced Scaffold NW_023494800.1 (20299742..20339035)

NW_023494800.1Genomic Context describing neighboring genes Neighboring gene transfer RNA serine (anticodon GCU) Neighboring gene deoxynucleoside kinase Neighboring gene eukaryotic translation initiation factor 4E binding protein 3 Neighboring gene thymosin, beta

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023494800 Unplaced Scaffold Reference Colossoma_macropomum

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ankyrin repeat and KH domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Colossoma macropomum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Colossoma_macropomum

Genomic

  1. NW_023494800.1 Reference Colossoma_macropomum

    Range
    20299742..20339035
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036589080.1 → XP_036444973.1  ankyrin repeat and KH domain-containing protein 1 isoform X8

    Conserved Domains (7) summary
    PHA03095
    Location:201 → 521
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1890 → 2237
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:777 → 863
    PRK03918; DNA double-strand break repair ATPase Rad50
    sd00045
    Location:396 → 425
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:529 → 619
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1742 → 1824
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl39094
    Location:1153 → 1441
    Ank_2; Ankyrin repeats (3 copies)

  2. XM_036589073.1 → XP_036444966.1  ankyrin repeat and KH domain-containing protein 1 isoform X2

    Conserved Domains (7) summary
    PHA03095
    Location:206 → 526
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1894 → 2241
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:782 → 868
    PRK03918; DNA double-strand break repair ATPase Rad50
    sd00045
    Location:401 → 430
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:534 → 624
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1746 → 1828
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl39094
    Location:1157 → 1445
    Ank_2; Ankyrin repeats (3 copies)

  3. XM_036589075.1 → XP_036444968.1  ankyrin repeat and KH domain-containing protein 1 isoform X4

    Conserved Domains (7) summary
    PHA03095
    Location:201 → 521
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1890 → 2237
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:777 → 863
    PRK03918; DNA double-strand break repair ATPase Rad50
    sd00045
    Location:396 → 425
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:529 → 619
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1742 → 1824
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl39094
    Location:1153 → 1441
    Ank_2; Ankyrin repeats (3 copies)

  4. XM_036589076.1 → XP_036444969.1  ankyrin repeat and KH domain-containing protein 1 isoform X5

    Conserved Domains (7) summary
    PHA03095
    Location:195 → 515
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1884 → 2231
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:771 → 857
    PRK03918; DNA double-strand break repair ATPase Rad50
    sd00045
    Location:390 → 419
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:523 → 613
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1736 → 1818
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl39094
    Location:1147 → 1435
    Ank_2; Ankyrin repeats (3 copies)

  5. XM_036589078.1 → XP_036444971.1  ankyrin repeat and KH domain-containing protein 1 isoform X6

    Conserved Domains (7) summary
    PHA03095
    Location:190 → 510
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1879 → 2226
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:766 → 852
    PRK03918; DNA double-strand break repair ATPase Rad50
    sd00045
    Location:385 → 414
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:518 → 608
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1731 → 1813
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl39094
    Location:1142 → 1430
    Ank_2; Ankyrin repeats (3 copies)

  6. XM_036589072.1 → XP_036444965.1  ankyrin repeat and KH domain-containing protein 1 isoform X1

    Conserved Domains (7) summary
    PHA03095
    Location:206 → 526
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1895 → 2242
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:782 → 868
    PRK03918; DNA double-strand break repair ATPase Rad50
    sd00045
    Location:401 → 430
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:534 → 624
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1747 → 1829
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl39094
    Location:1158 → 1446
    Ank_2; Ankyrin repeats (3 copies)

  7. XM_036589074.1 → XP_036444967.1  ankyrin repeat and KH domain-containing protein 1 isoform X3

    Conserved Domains (7) summary
    PHA03095
    Location:206 → 526
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1895 → 2242
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:782 → 868
    PRK03918; DNA double-strand break repair ATPase Rad50
    sd00045
    Location:401 → 430
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:534 → 624
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1747 → 1829
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl39094
    Location:1158 → 1446
    Ank_2; Ankyrin repeats (3 copies)

  8. XM_036589079.1 → XP_036444972.1  ankyrin repeat and KH domain-containing protein 1 isoform X7

    Conserved Domains (7) summary
    PHA03095
    Location:24 → 344
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1713 → 2060
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:600 → 686
    PRK03918; DNA double-strand break repair ATPase Rad50
    sd00045
    Location:219 → 248
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:352 → 442
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1565 → 1647
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl39094
    Location:976 → 1264
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein
Heading Accession and Version

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