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atg4b autophagy related 4B, cysteine peptidase [ Megalops cyprinoides (Indo-Pacific tarpon) ]

Gene ID: 118773034, updated on 20-Mar-2024

Summary

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Gene symbol
atg4b
Gene description
autophagy related 4B, cysteine peptidase
See related
EnsemblRapid:ENSMCNG00005025150
Gene type
protein coding
RefSeq status
MODEL
Organism
Megalops cyprinoides
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Elopiformes; Megalopidae; Megalops
Orthologs
human zebrafish all
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Genomic context

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See atg4b in Genome Data Viewer
Location:
chromosome: 2
Exon count:
16
Annotation release Status Assembly Chr Location
100 current fMegCyp1.pri (GCF_013368585.1) 2 NC_050584.1 (32978912..32988911)

Chromosome 2 - NC_050584.1Genomic Context describing neighboring genes Neighboring gene serine/threonine kinase 25a Neighboring gene BCL2 family apoptosis regulator BOK a Neighboring gene deoxythymidylate kinase (thymidylate kinase) Neighboring gene alanine--glyoxylate and serine--pyruvate aminotransferase a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_050584.1 Chromosome 2 Reference fMegCyp1.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-phosphatidylethanolamide deconjugating activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cysteine protease ATG4B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Megalops cyprinoides Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fMegCyp1.pri Primary Assembly

Genomic

  1. NC_050584.1 Reference fMegCyp1.pri Primary Assembly

    Range
    32978912..32988911
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036521771.1 → XP_036377664.1  cysteine protease ATG4B isoform X1

    Related
    ENSMCNP00005066459.1, ENSMCNT00005067635.1
    Conserved Domains (1) summary
    pfam03416
    Location:39 → 335
    Peptidase_C54; Peptidase family C54

  2. XM_036521773.1 → XP_036377666.1  cysteine protease ATG4B isoform X2

    Conserved Domains (1) summary
    pfam03416
    Location:1 → 261
    Peptidase_C54; Peptidase family C54

  3. XM_036521775.1 → XP_036377668.1  cysteine protease ATG4B isoform X2

    Conserved Domains (1) summary
    pfam03416
    Location:1 → 261
    Peptidase_C54; Peptidase family C54

  4. XM_036521776.1 → XP_036377669.1  cysteine protease ATG4B isoform X2

    Conserved Domains (1) summary
    pfam03416
    Location:1 → 261
    Peptidase_C54; Peptidase family C54

  5. XM_036521774.1 → XP_036377667.1  cysteine protease ATG4B isoform X2

    Conserved Domains (1) summary
    pfam03416
    Location:1 → 261
    Peptidase_C54; Peptidase family C54

  6. XM_036521772.1 → XP_036377665.1  cysteine protease ATG4B isoform X2

    Conserved Domains (1) summary
    pfam03416
    Location:1 → 261
    Peptidase_C54; Peptidase family C54
Nucleotide Protein
Heading Accession and Version

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