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ankhd1 ankyrin repeat and KH domain containing 1 [ Morone saxatilis (striped sea-bass) ]

Gene ID: 118333440, updated on 20-Mar-2024

Summary

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Gene symbol
ankhd1
Gene description
ankyrin repeat and KH domain containing 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Morone saxatilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Moronidae; Morone
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
40
Annotation release Status Assembly Chr Location
100 current NCSU_SB_2.0 (GCF_004916995.1) Unplaced Scaffold NW_023339785.1 (18270477..18297257, complement)

NW_023339785.1Genomic Context describing neighboring genes Neighboring gene clathrin, light chain B Neighboring gene HIG1 hypoxia inducible domain family, member 2A Neighboring gene heterogeneous nuclear ribonucleoprotein H-like Neighboring gene RUN and FYVE domain containing 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023339785 Unplaced Scaffold Reference NCSU_SB_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome annotation and marker discovery in white bass (Morone chrysops) and striped bass (Morone saxatilis). Li C, et al. Anim Genet, 2014 Dec. PMID 25160849

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ankyrin repeat and KH domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Morone saxatilis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NCSU_SB_2.0 Primary Assembly

Genomic

  1. NW_023339785.1 Reference NCSU_SB_2.0 Primary Assembly

    Range
    18270477..18297257 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035669075.1 → XP_035524968.1  ankyrin repeat and KH domain-containing protein 1 isoform X5

    Conserved Domains (8) summary
    smart00248
    Location:1118 → 1146
    ANK; ankyrin repeats
    PHA03095
    Location:207 → 529
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1990 → 2322
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:787 → 874
    PRK03918; DNA double-strand break repair ATPase Rad50
    sd00045
    Location:402 → 433
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:537 → 627
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1798 → 1880
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1358 → 1510
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

  2. XM_035669084.1 → XP_035524977.1  ankyrin repeat and KH domain-containing protein 1 isoform X13

    Conserved Domains (8) summary
    smart00248
    Location:1102 → 1130
    ANK; ankyrin repeats
    PHA03095
    Location:191 → 511
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1974 → 2306
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:763 → 855
    PRK03918; DNA double-strand break repair ATPase Rad50
    sd00045
    Location:386 → 415
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:519 → 609
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1782 → 1864
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1342 → 1494
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

  3. XM_035669083.1 → XP_035524976.1  ankyrin repeat and KH domain-containing protein 1 isoform X12

    Conserved Domains (8) summary
    smart00248
    Location:1104 → 1132
    ANK; ankyrin repeats
    PHA03095
    Location:191 → 513
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1976 → 2308
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:765 → 857
    PRK03918; DNA double-strand break repair ATPase Rad50
    sd00045
    Location:519 → 547
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:521 → 611
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1784 → 1866
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1344 → 1496
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

  4. XM_035669082.1 → XP_035524975.1  ankyrin repeat and KH domain-containing protein 1 isoform X11

    Conserved Domains (8) summary
    smart00248
    Location:1109 → 1137
    ANK; ankyrin repeats
    PHA03095
    Location:196 → 518
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1981 → 2313
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:770 → 862
    PRK03918; DNA double-strand break repair ATPase Rad50
    sd00045
    Location:524 → 552
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:526 → 616
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1789 → 1871
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1349 → 1501
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

  5. XM_035669086.1 → XP_035524979.1  ankyrin repeat and KH domain-containing protein 1 isoform X15

    Conserved Domains (8) summary
    smart00248
    Location:1113 → 1141
    ANK; ankyrin repeats
    PHA03095
    Location:202 → 522
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1985 → 2317
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:774 → 866
    PRK03918; DNA double-strand break repair ATPase Rad50
    sd00045
    Location:397 → 426
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:530 → 620
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1793 → 1875
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1353 → 1505
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

  6. XM_035669080.1 → XP_035524973.1  ankyrin repeat and KH domain-containing protein 1 isoform X9

    Conserved Domains (8) summary
    smart00248
    Location:1113 → 1141
    ANK; ankyrin repeats
    PHA03095
    Location:202 → 522
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1985 → 2317
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:774 → 866
    PRK03918; DNA double-strand break repair ATPase Rad50
    sd00045
    Location:397 → 426
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:530 → 620
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1793 → 1875
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1353 → 1505
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

  7. XM_035669077.1 → XP_035524970.1  ankyrin repeat and KH domain-containing protein 1 isoform X7

    Conserved Domains (8) summary
    smart00248
    Location:1115 → 1143
    ANK; ankyrin repeats
    PHA03095
    Location:202 → 524
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1987 → 2319
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:776 → 868
    PRK03918; DNA double-strand break repair ATPase Rad50
    sd00045
    Location:397 → 428
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:532 → 622
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1795 → 1877
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1355 → 1507
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

  8. XM_035669085.1 → XP_035524978.1  ankyrin repeat and KH domain-containing protein 1 isoform X14

    Conserved Domains (8) summary
    smart00248
    Location:1118 → 1146
    ANK; ankyrin repeats
    PHA03095
    Location:207 → 527
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1990 → 2322
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:779 → 871
    PRK03918; DNA double-strand break repair ATPase Rad50
    sd00045
    Location:402 → 431
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:535 → 625
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1798 → 1880
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1358 → 1510
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

  9. XM_035669074.1 → XP_035524967.1  ankyrin repeat and KH domain-containing protein 1 isoform X4

    Conserved Domains (8) summary
    smart00248
    Location:1118 → 1146
    ANK; ankyrin repeats
    PHA03095
    Location:207 → 527
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1990 → 2322
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:779 → 871
    PRK03918; DNA double-strand break repair ATPase Rad50
    sd00045
    Location:402 → 431
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:535 → 625
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1798 → 1880
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1358 → 1510
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

  10. XM_035669081.1 → XP_035524974.1  ankyrin repeat and KH domain-containing protein 1 isoform X10

    Conserved Domains (8) summary
    smart00248
    Location:1120 → 1148
    ANK; ankyrin repeats
    PHA03095
    Location:207 → 529
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1991 → 2529
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:781 → 873
    PRK03918; DNA double-strand break repair ATPase Rad50
    sd00045
    Location:402 → 433
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:537 → 627
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1799 → 1881
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1360 → 1512
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

  11. XM_035669072.1 → XP_035524965.1  ankyrin repeat and KH domain-containing protein 1 isoform X2

    Conserved Domains (8) summary
    smart00248
    Location:1120 → 1148
    ANK; ankyrin repeats
    PHA03095
    Location:207 → 529
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1991 → 2323
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:781 → 873
    PRK03918; DNA double-strand break repair ATPase Rad50
    sd00045
    Location:402 → 433
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:537 → 627
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1799 → 1881
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1360 → 1512
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

  12. XM_035669078.1 → XP_035524971.1  ankyrin repeat and KH domain-containing protein 1 isoform X8

    Conserved Domains (8) summary
    smart00248
    Location:1120 → 1148
    ANK; ankyrin repeats
    PHA03095
    Location:207 → 529
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1992 → 2530
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:781 → 873
    PRK03918; DNA double-strand break repair ATPase Rad50
    sd00045
    Location:402 → 433
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:537 → 627
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1800 → 1882
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1360 → 1512
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

  13. XM_035669073.1 → XP_035524966.1  ankyrin repeat and KH domain-containing protein 1 isoform X3

    Conserved Domains (8) summary
    smart00248
    Location:1120 → 1148
    ANK; ankyrin repeats
    PHA03095
    Location:207 → 529
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1992 → 2530
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:781 → 873
    PRK03918; DNA double-strand break repair ATPase Rad50
    sd00045
    Location:402 → 433
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:537 → 627
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1800 → 1882
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1360 → 1512
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

  14. XM_035669076.1 → XP_035524969.1  ankyrin repeat and KH domain-containing protein 1 isoform X6

    Conserved Domains (8) summary
    smart00248
    Location:1120 → 1148
    ANK; ankyrin repeats
    PHA03095
    Location:207 → 529
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1992 → 2324
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:781 → 873
    PRK03918; DNA double-strand break repair ATPase Rad50
    sd00045
    Location:402 → 433
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:537 → 627
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1800 → 1882
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1360 → 1512
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

  15. XM_035669071.1 → XP_035524964.1  ankyrin repeat and KH domain-containing protein 1 isoform X1

    Conserved Domains (8) summary
    smart00248
    Location:1120 → 1148
    ANK; ankyrin repeats
    PHA03095
    Location:207 → 529
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1992 → 2324
    PHA03247; large tegument protein UL36; Provisional
    PRK03918
    Location:781 → 873
    PRK03918; DNA double-strand break repair ATPase Rad50
    sd00045
    Location:402 → 433
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:537 → 627
    Ank_2; Ankyrin repeats (3 copies)
    cd22503
    Location:1800 → 1882
    KH-I_ANKHD1; type I K homology (KH) RNA-binding domain found in ankyrin repeat and KH domain-containing protein 1 (ANKHD1) and similar proteins
    cl40437
    Location:1360 → 1512
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)
Nucleotide Protein
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