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march9 membrane-associated ring finger (C3HC4) 9 [ Scophthalmus maximus (turbot) ]

Gene ID: 118316579, updated on 20-Mar-2024

Summary

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Gene symbol
march9
Gene description
membrane-associated ring finger (C3HC4) 9
See related
EnsemblRapid:ENSSMAG00025024161
Gene type
protein coding
RefSeq status
MODEL
Organism
Scophthalmus maximus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Scophthalmidae; Scophthalmus
Also known as
marchf9
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
101 current ASM2237912v1 (GCF_022379125.1) 3 NC_061517.1 (5486204..5501000, complement)
100 previous assembly ASM1334776v1 (GCF_013347765.1) 11 NC_049698.1 (20565727..20580516)

Chromosome 3 - NC_061517.1Genomic Context describing neighboring genes Neighboring gene CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 Neighboring gene natural resistance-associated macrophage protein 2-like Neighboring gene uncharacterized LOC118316582 Neighboring gene tetraspanin 31 Neighboring gene ArfGAP with GTPase domain, ankyrin repeat and PH domain 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. High-throughput sequence analysis of turbot (Scophthalmus maximus) transcriptome using 454-pyrosequencing for the discovery of antiviral immune genes. Pereiro P, et al. PLoS One, 2012. PMID 22629298, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase MARCHF9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Scophthalmus maximus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2237912v1 Primary Assembly

Genomic

  1. NC_061517.1 Reference ASM2237912v1 Primary Assembly

    Range
    5486204..5501000 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035644531.2 → XP_035500424.1  E3 ubiquitin-protein ligase MARCHF9

    UniProtKB/TrEMBL
    A0A8D3B878
    Related
    ENSSMAP00025072791.1, ENSSMAT00025079769.1
    Conserved Domains (1) summary
    cd16811
    Location:140 → 190
    RING_CH-C4HC3_MARCH4_9; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING finger protein MARCH4, MARCH9, and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

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