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ALKBH8 alkB homolog 8, tRNA methyltransferase [ Oxyura jamaicensis (ruddy duck) ]

Gene ID: 118167662, updated on 20-Mar-2024

Summary

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Gene symbol
ALKBH8
Gene description
alkB homolog 8, tRNA methyltransferase
See related
EnsemblRapid:ENSOJMG00000014596
Gene type
protein coding
RefSeq status
MODEL
Organism
Oxyura jamaicensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Oxyura
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
14
Annotation release Status Assembly Chr Location
100 current BPBGC_Ojam_1.0 (GCF_011077185.1) 1 NC_048893.1 (188210319..188256139)

Chromosome 1 - NC_048893.1Genomic Context describing neighboring genes Neighboring gene ELMO domain containing 1 Neighboring gene uncharacterized LOC118167703 Neighboring gene CWF19 like cell cycle control factor 2 Neighboring gene vitelline membrane outer layer protein 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_048893.1 Chromosome 1 Reference BPBGC_Ojam_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables S-adenosylmethionine-dependent methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA wobble uridine modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alkylated DNA repair protein alkB homolog 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oxyura jamaicensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BPBGC_Ojam_1.0

Genomic

  1. NC_048893.1 Reference BPBGC_Ojam_1.0

    Range
    188210319..188256139
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035327328.1 → XP_035183219.1  alkylated DNA repair protein alkB homolog 8 isoform X1

    Conserved Domains (3) summary
    pfam08241
    Location:428 → 517
    Methyltransf_11; Methyltransferase domain
    cd12431
    Location:53 → 134
    RRM_ALKBH8; RNA recognition motif (RRM) found in alkylated DNA repair protein alkB homolog 8 (ALKBH8) and similar proteins
    cl21496
    Location:148 → 310
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

  2. XM_035327338.1 → XP_035183229.1  alkylated DNA repair protein alkB homolog 8 isoform X2

    Conserved Domains (3) summary
    pfam08241
    Location:419 → 508
    Methyltransf_11; Methyltransferase domain
    cd12431
    Location:44 → 125
    RRM_ALKBH8; RNA recognition motif (RRM) found in alkylated DNA repair protein alkB homolog 8 (ALKBH8) and similar proteins
    cl21496
    Location:139 → 301
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

  3. XM_035327347.1 → XP_035183238.1  alkylated DNA repair protein alkB homolog 8 isoform X2

    Related
    ENSOJMP00000022926.1, ENSOJMT00000023920.1
    Conserved Domains (3) summary
    pfam08241
    Location:419 → 508
    Methyltransf_11; Methyltransferase domain
    cd12431
    Location:44 → 125
    RRM_ALKBH8; RNA recognition motif (RRM) found in alkylated DNA repair protein alkB homolog 8 (ALKBH8) and similar proteins
    cl21496
    Location:139 → 301
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

  4. XM_035327364.1 → XP_035183255.1  alkylated DNA repair protein alkB homolog 8 isoform X4

    Conserved Domains (3) summary
    pfam13649
    Location:360 → 447
    Methyltransf_25; Methyltransferase domain
    cl17169
    Location:1 → 68
    RRM_SF; RNA recognition motif (RRM) superfamily
    cl21496
    Location:82 → 244
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

  5. XM_035327355.1 → XP_035183246.1  alkylated DNA repair protein alkB homolog 8 isoform X3

    Conserved Domains (3) summary
    pfam13649
    Location:373 → 460
    Methyltransf_25; Methyltransferase domain
    cd12431
    Location:1 → 81
    RRM_ALKBH8; RNA recognition motif (RRM) found in alkylated DNA repair protein alkB homolog 8 (ALKBH8) and similar proteins
    cl21496
    Location:95 → 257
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily
Nucleotide Protein
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