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ABTB1 ankyrin repeat and BTB domain containing 1 [ Trachemys scripta elegans ]

Gene ID: 117879909, updated on 19-Mar-2024

Summary

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Gene symbol
ABTB1
Gene description
ankyrin repeat and BTB domain containing 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Trachemys scripta elegans (sub-species: elegans)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Trachemys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
13
Annotation release Status Assembly Chr Location
100 current CAS_Tse_1.0 (GCF_013100865.1) 7 NC_048304.1 (22516228..22554930)

Chromosome 7 - NC_048304.1Genomic Context describing neighboring genes Neighboring gene minichromosome maintenance complex component 2 Neighboring gene podocalyxin like 2 Neighboring gene monoglyceride lipase Neighboring gene kelch repeat and BTB domain containing 12

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_048304.1 Chromosome 7 Reference CAS_Tse_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Embryonic Transcriptome of the Red-Eared Slider Turtle (Trachemys scripta). Kaplinsky NJ, et al. PLoS One, 2013. PMID 23840449, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ankyrin repeat and BTB/POZ domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Trachemys scripta elegans Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAS_Tse_1.0 Primary Assembly

Genomic

  1. NC_048304.1 Reference CAS_Tse_1.0 Primary Assembly

    Range
    22516228..22554930
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034775446.1 → XP_034631337.1  ankyrin repeat and BTB/POZ domain-containing protein 1 isoform X2

  2. XM_034775445.1 → XP_034631336.1  ankyrin repeat and BTB/POZ domain-containing protein 1 isoform X1

    Conserved Domains (5) summary
    sd00045
    Location:1 → 33
    ANK; ANK repeat [structural motif]
    cd18295
    Location:96 → 214
    BTB1_POZ_ABTB1_BPOZ1; first BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Ankyrin repeat and BTB/POZ domain-containing protein 1 (ABTB1)
    cd18296
    Location:253 → 376
    BTB2_POZ_ABTB1_BPOZ1; second BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Ankyrin repeat and BTB/POZ domain-containing protein 1 (ABTB1)
    cd18497
    Location:375 → 446
    BACK_ABTB1_BPOZ; BACK (BTB and C-terminal Kelch) domain found in ankyrin repeat and BTB/POZ domain-containing protein 1 (ABTB1)
    pfam12796
    Location:6 → 65
    Ank_2; Ankyrin repeats (3 copies)

  3. XM_034775447.1 → XP_034631338.1  ankyrin repeat and BTB/POZ domain-containing protein 1 isoform X3

    Conserved Domains (3) summary
    cd18295
    Location:1 → 119
    BTB1_POZ_ABTB1_BPOZ1; first BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Ankyrin repeat and BTB/POZ domain-containing protein 1 (ABTB1)
    cd18296
    Location:158 → 281
    BTB2_POZ_ABTB1_BPOZ1; second BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Ankyrin repeat and BTB/POZ domain-containing protein 1 (ABTB1)
    cd18497
    Location:280 → 351
    BACK_ABTB1_BPOZ; BACK (BTB and C-terminal Kelch) domain found in ankyrin repeat and BTB/POZ domain-containing protein 1 (ABTB1)

  4. XM_034775448.1 → XP_034631339.1  ankyrin repeat and BTB/POZ domain-containing protein 1 isoform X3

    Conserved Domains (3) summary
    cd18295
    Location:1 → 119
    BTB1_POZ_ABTB1_BPOZ1; first BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Ankyrin repeat and BTB/POZ domain-containing protein 1 (ABTB1)
    cd18296
    Location:158 → 281
    BTB2_POZ_ABTB1_BPOZ1; second BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Ankyrin repeat and BTB/POZ domain-containing protein 1 (ABTB1)
    cd18497
    Location:280 → 351
    BACK_ABTB1_BPOZ; BACK (BTB and C-terminal Kelch) domain found in ankyrin repeat and BTB/POZ domain-containing protein 1 (ABTB1)
Nucleotide Protein
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