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ATXN7L3 ataxin 7 like 3 [ Trachemys scripta elegans ]

Gene ID: 117869210, updated on 19-Mar-2024

Summary

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Gene symbol
ATXN7L3
Gene description
ataxin 7 like 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Trachemys scripta elegans (sub-species: elegans)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Trachemys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 23
Exon count:
15
Annotation release Status Assembly Chr Location
100 current CAS_Tse_1.0 (GCF_013100865.1) 23 NC_048320.1 (8690519..8710766)

Chromosome 23 - NC_048320.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 4 member 1 (Diego blood group) Neighboring gene upstream binding transcription factor Neighboring gene transmembrane and ubiquitin like domain containing 2 Neighboring gene ankyrin repeat and SOCS box containing 16

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_048320.1 Chromosome 23 Reference CAS_Tse_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Embryonic Transcriptome of the Red-Eared Slider Turtle (Trachemys scripta). Kaplinsky NJ, et al. PLoS One, 2013. PMID 23840449, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of DUBm complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of SAGA complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ataxin-7-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Trachemys scripta elegans Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAS_Tse_1.0 Primary Assembly

Genomic

  1. NC_048320.1 Reference CAS_Tse_1.0 Primary Assembly

    Range
    8690519..8710766
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034755845.1 → XP_034611736.1  ataxin-7-like protein 3 isoform X1

  2. XM_034755848.1 → XP_034611739.1  ataxin-7-like protein 3 isoform X2

    Conserved Domains (1) summary
    pfam08209
    Location:80 → 112
    Sgf11; Sgf11 (transcriptional regulation protein)

  3. XM_034755849.1 → XP_034611740.1  ataxin-7-like protein 3 isoform X3

    Conserved Domains (1) summary
    pfam08209
    Location:80 → 112
    Sgf11; Sgf11 (transcriptional regulation protein)

  4. XM_034755847.1 → XP_034611738.1  ataxin-7-like protein 3 isoform X1

  5. XM_034755846.1 → XP_034611737.1  ataxin-7-like protein 3 isoform X1

Nucleotide Protein
Heading Accession and Version

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