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atrn attractin [ Trematomus bernacchii (emerald rockcod) ]

Gene ID: 117469472, updated on 19-Mar-2024

Summary

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Gene symbol
atrn
Gene description
attractin
See related
EnsemblRapid:ENSTBNG00005000077
Gene type
protein coding
RefSeq status
MODEL
Organism
Trematomus bernacchii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Nototheniidae; Trematomus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
29
Annotation release Status Assembly Chr Location
100 current fTreBer1.1 (GCF_902827165.1) Unplaced Scaffold NW_022987313.1 (418611..560256, complement)

NW_022987313.1Genomic Context describing neighboring genes Neighboring gene adaptor related protein complex 5 subunit sigma 1 Neighboring gene GDNF family receptor alpha 4a Neighboring gene eukaryotic translation initiation factor 2-alpha kinase 3 Neighboring gene ribose 5-phosphate isomerase A (ribose 5-phosphate epimerase)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022987313 Unplaced Scaffold Reference fTreBer1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
attractin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Trematomus bernacchii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTreBer1.1

Genomic

  1. NW_022987313.1 Reference fTreBer1.1

    Range
    418611..560256 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034114002.1 → XP_033969893.1  attractin isoform X2

    Conserved Domains (7) summary
    cd03597
    Location:729 → 858
    CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
    PHA03098
    Location:282 → 428
    PHA03098; kelch-like protein; Provisional
    cd00041
    Location:71 → 186
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00055
    Location:1009 → 1054
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:278 → 321
    Kelch; KELCH repeat [structural motif]
    pfam01437
    Location:870 → 921
    PSI; Plexin repeat
    cl15693
    Location:921 → 951
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  2. XM_034113927.1 → XP_033969818.1  attractin isoform X1

    Conserved Domains (7) summary
    cd03597
    Location:729 → 858
    CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
    PHA03098
    Location:282 → 428
    PHA03098; kelch-like protein; Provisional
    cd00041
    Location:71 → 186
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00055
    Location:1009 → 1054
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:278 → 321
    Kelch; KELCH repeat [structural motif]
    pfam01437
    Location:870 → 921
    PSI; Plexin repeat
    cl15693
    Location:921 → 951
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  3. XM_034114077.1 → XP_033969968.1  attractin isoform X3

    Related
    ENSTBNP00005000157.1, ENSTBNT00005000189.1
    Conserved Domains (7) summary
    cd03597
    Location:727 → 856
    CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
    PHA03098
    Location:282 → 428
    PHA03098; kelch-like protein; Provisional
    cd00041
    Location:71 → 186
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00055
    Location:1007 → 1052
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:278 → 321
    Kelch; KELCH repeat [structural motif]
    pfam01437
    Location:868 → 919
    PSI; Plexin repeat
    cl15693
    Location:919 → 949
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
Nucleotide Protein
Heading Accession and Version

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