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ATG4B autophagy related 4B cysteine peptidase [ Geotrypetes seraphini ]

Gene ID: 117366369, updated on 19-Mar-2024

Summary

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Gene symbol
ATG4B
Gene description
autophagy related 4B cysteine peptidase
Gene type
protein coding
RefSeq status
MODEL
Organism
Geotrypetes seraphini
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Geotrypetes
Orthologs
human mouse all
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Genomic context

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See ATG4B in Genome Data Viewer
Location:
chromosome: 9
Exon count:
18
Annotation release Status Assembly Chr Location
100 current aGeoSer1.1 (GCF_902459505.1) 9 NC_047092.1 (110005462..110675024, complement)

Chromosome 9 - NC_047092.1Genomic Context describing neighboring genes Neighboring gene inhibitor of growth family member 5 Neighboring gene deoxythymidylate kinase Neighboring gene MICOS complex subunit mic25-like Neighboring gene THAP domain containing 4 Neighboring gene ADP/ATP translocase 4-like Neighboring gene BCL2 family apoptosis regulator BOK

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047092.1 Chromosome 9 Reference aGeoSer1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-phosphatidylethanolamide deconjugating activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cysteine protease ATG4B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geotrypetes seraphini Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aGeoSer1.1 Primary Assembly

Genomic

  1. NC_047092.1 Reference aGeoSer1.1 Primary Assembly

    Range
    110005462..110675024 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033957652.1 → XP_033813543.1  cysteine protease ATG4B isoform X6

    UniProtKB/TrEMBL
    A0A6P8S9H4
    Conserved Domains (1) summary
    pfam03416
    Location:1 → 260
    Peptidase_C54; Peptidase family C54

  2. XM_033957647.1 → XP_033813538.1  cysteine protease ATG4B isoform X3

    UniProtKB/TrEMBL
    A0A6P8S9G7
    Conserved Domains (1) summary
    pfam03416
    Location:40 → 335
    Peptidase_C54; Peptidase family C54

  3. XM_033957650.1 → XP_033813541.1  cysteine protease ATG4B isoform X6

    UniProtKB/TrEMBL
    A0A6P8S9H4
    Conserved Domains (1) summary
    pfam03416
    Location:1 → 260
    Peptidase_C54; Peptidase family C54

  4. XM_033957653.1 → XP_033813544.1  cysteine protease ATG4B isoform X6

    UniProtKB/TrEMBL
    A0A6P8S9H4
    Conserved Domains (1) summary
    pfam03416
    Location:1 → 260
    Peptidase_C54; Peptidase family C54

  5. XM_033957654.1 → XP_033813545.1  cysteine protease ATG4B isoform X6

    UniProtKB/TrEMBL
    A0A6P8S9H4
    Conserved Domains (1) summary
    pfam03416
    Location:1 → 260
    Peptidase_C54; Peptidase family C54

  6. XM_033957651.1 → XP_033813542.1  cysteine protease ATG4B isoform X6

    UniProtKB/TrEMBL
    A0A6P8S9H4
    Conserved Domains (1) summary
    pfam03416
    Location:1 → 260
    Peptidase_C54; Peptidase family C54

  7. XM_033957649.1 → XP_033813540.1  cysteine protease ATG4B isoform X5

    UniProtKB/TrEMBL
    A0A6P8S5J1
    Conserved Domains (1) summary
    pfam03416
    Location:61 → 322
    Peptidase_C54; Peptidase family C54

  8. XM_033957646.1 → XP_033813537.1  cysteine protease ATG4B isoform X2

    UniProtKB/TrEMBL
    A0A6P8S6P6
    Conserved Domains (1) summary
    pfam03416
    Location:61 → 340
    Peptidase_C54; Peptidase family C54

  9. XM_033957648.1 → XP_033813539.1  cysteine protease ATG4B isoform X4

    UniProtKB/TrEMBL
    A0A6P8S651
    Conserved Domains (1) summary
    pfam03416
    Location:61 → 356
    Peptidase_C54; Peptidase family C54

  10. XM_033957645.1 → XP_033813536.1  cysteine protease ATG4B isoform X1

    UniProtKB/TrEMBL
    A0A6P8SBH2
    Conserved Domains (1) summary
    pfam03416
    Location:61 → 356
    Peptidase_C54; Peptidase family C54
Nucleotide Protein
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