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Tsga13 testis specific gene A13 [ Mus musculus (house mouse) ]

Gene ID: 116732, updated on 5-Mar-2024

Summary

Official Symbol
Tsga13provided by MGI
Official Full Name
testis specific gene A13provided by MGI
Primary source
MGI:MGI:1891413
See related
Ensembl:ENSMUSG00000039032 AllianceGenome:MGI:1891413
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Vme1; 1700023D02Rik
Summary
Orthologous to human TSGA13 (testis specific 13). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 2.8), genital fat pad adult (RPKM 0.2) and 1 other tissue See more
Orthologs
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Genomic context

Location:
6 A3.3; 6 12.54 cM
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (30873915..30902089, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (30896981..30921570, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene mesoderm specific transcript Neighboring gene coatomer protein complex, subunit gamma 2 Neighboring gene coatomer protein complex, subunit gamma 2, opposite strand 2 Neighboring gene RIKEN cDNA 4930412F09 gene Neighboring gene predicted gene, 38781 Neighboring gene STARR-seq mESC enhancer starr_15475 Neighboring gene Kruppel-like transcription factor 14 Neighboring gene predicted gene, 40359

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2)  1 citation
  • Endonuclease-mediated (1) 

General protein information

Preferred Names
testis-specific gene 13 protein
Names
variegated monoallelic expression 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_054073.2NP_473414.1  testis-specific gene 13 protein

    See identical proteins and their annotated locations for NP_473414.1

    Status: PROVISIONAL

    Source sequence(s)
    AK006265
    Consensus CDS
    CCDS19980.1
    UniProtKB/Swiss-Prot
    Q9DA17
    Related
    ENSMUSP00000040894.2, ENSMUST00000048580.2
    Conserved Domains (1) summary
    pfam14994
    Location:1272
    TSGA13; Testis-specific gene 13 protein

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    30873915..30902089 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036165759.1XP_036021652.1  testis-specific gene 13 protein isoform X3

    Conserved Domains (1) summary
    pfam14994
    Location:1237
    TSGA13; Testis-specific gene 13 protein
  2. XM_036165755.1XP_036021648.1  testis-specific gene 13 protein isoform X1

    Conserved Domains (1) summary
    pfam14994
    Location:3273
    TSGA13; Testis-specific gene 13 protein
  3. XM_036165756.1XP_036021649.1  testis-specific gene 13 protein isoform X2

    UniProtKB/Swiss-Prot
    Q9DA17
    Conserved Domains (1) summary
    pfam14994
    Location:1272
    TSGA13; Testis-specific gene 13 protein
  4. XM_036165757.1XP_036021650.1  testis-specific gene 13 protein isoform X3

    Conserved Domains (1) summary
    pfam14994
    Location:1237
    TSGA13; Testis-specific gene 13 protein
  5. XM_036165758.1XP_036021651.1  testis-specific gene 13 protein isoform X3

    Conserved Domains (1) summary
    pfam14994
    Location:1237
    TSGA13; Testis-specific gene 13 protein
  6. XM_017321349.3XP_017176838.1  testis-specific gene 13 protein isoform X4

    Conserved Domains (1) summary
    pfam14994
    Location:3177
    TSGA13; Testis-specific gene 13 protein