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aqr aquarius intron-binding spliceosomal factor [ Etheostoma spectabile (orangethroat darter) ]

Gene ID: 116670705, updated on 18-Mar-2024

Summary

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Gene symbol
aqr
Gene description
aquarius intron-binding spliceosomal factor
Locus tag
FQN60_008798
Gene type
protein coding
RefSeq status
MODEL
Organism
Etheostoma spectabile
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Etheostomatinae; Etheostoma
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 20
Exon count:
36
Annotation release Status Assembly Chr Location
100 current UIUC_Espe_1.0 (GCF_008692095.1) 20 NC_045752.1 (5657988..5715048, complement)

Chromosome 20 - NC_045752.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116670710 Neighboring gene uncharacterized LOC116670707 Neighboring gene actin alpha cardiac muscle 1 Neighboring gene uncharacterized LOC116670709 Neighboring gene zinc finger protein 271-like Neighboring gene diphthamine biosynthesis 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045752.1 Chromosome 20 Reference UIUC_Espe_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA helicase aquarius

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Etheostoma spectabile Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UIUC_Espe_1.0 Primary Assembly

Genomic

  1. NC_045752.1 Reference UIUC_Espe_1.0 Primary Assembly

    Range
    5657988..5715048 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032501337.1 → XP_032357228.1  RNA helicase aquarius isoform X1

    Conserved Domains (3) summary
    cd18808
    Location:1144 → 1327
    SF1_C_Upf1; C-terminal helicase domain of Upf1-like family helicases
    cd17935
    Location:801 → 1156
    EEXXQc_AQR; EEXXQ-box helicase domain of AQR
    pfam16399
    Location:21 → 806
    Aquarius_N; Intron-binding protein aquarius N-terminus

  2. XM_032501336.1 → XP_032357227.1  RNA helicase aquarius isoform X1

    Conserved Domains (3) summary
    cd18808
    Location:1144 → 1327
    SF1_C_Upf1; C-terminal helicase domain of Upf1-like family helicases
    cd17935
    Location:801 → 1156
    EEXXQc_AQR; EEXXQ-box helicase domain of AQR
    pfam16399
    Location:21 → 806
    Aquarius_N; Intron-binding protein aquarius N-terminus

  3. XM_032501338.1 → XP_032357229.1  RNA helicase aquarius isoform X2

    Conserved Domains (3) summary
    cd18808
    Location:1144 → 1327
    SF1_C_Upf1; C-terminal helicase domain of Upf1-like family helicases
    cd17935
    Location:801 → 1156
    EEXXQc_AQR; EEXXQ-box helicase domain of AQR
    pfam16399
    Location:21 → 806
    Aquarius_N; Intron-binding protein aquarius N-terminus

  4. XM_032501335.1 → XP_032357226.1  RNA helicase aquarius isoform X1

    Conserved Domains (3) summary
    cd18808
    Location:1144 → 1327
    SF1_C_Upf1; C-terminal helicase domain of Upf1-like family helicases
    cd17935
    Location:801 → 1156
    EEXXQc_AQR; EEXXQ-box helicase domain of AQR
    pfam16399
    Location:21 → 806
    Aquarius_N; Intron-binding protein aquarius N-terminus
Nucleotide Protein
Heading Accession and Version

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