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adamts17 ADAM metallopeptidase with thrombospondin type 1 motif, 17 [ Gadus morhua (Atlantic cod) ]

Gene ID: 115558912, updated on 17-Mar-2024

Summary

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Gene symbol
adamts17
Gene description
ADAM metallopeptidase with thrombospondin type 1 motif, 17
See related
Ensembl:ENSGMOG00000010476
Gene type
protein coding
RefSeq status
MODEL
Organism
Gadus morhua
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
Orthologs
human zebrafish all
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Genomic context

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See adamts17 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
19
Annotation release Status Assembly Chr Location
100 current gadMor3.0 (GCF_902167405.1) 14 NC_044061.1 (6166261..6228658)

Chromosome 14 - NC_044061.1Genomic Context describing neighboring genes Neighboring gene lines homolog 1 Neighboring gene ceramide synthase 3a Neighboring gene membrane integral NOTCH2 associated receptor 1 Neighboring gene 5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044061.1 Chromosome 14 Reference gadMor3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of Atlantic cod reveals a unique immune system. Star B, et al. Nature, 2011 Aug 10. PMID 21832995, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
A disintegrin and metalloproteinase with thrombospondin motifs 17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference gadMor3.0 Primary Assembly

Genomic

  1. NC_044061.1 Reference gadMor3.0 Primary Assembly

    Range
    6166261..6228658
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030377463.1 → XP_030233323.1  A disintegrin and metalloproteinase with thrombospondin motifs 17

    UniProtKB/TrEMBL
    A0A8C5BCY1
    Related
    ENSGMOP00000011237.2, ENSGMOT00000011539.2
    Conserved Domains (4) summary
    smart00209
    Location:563 → 615
    TSP1; Thrombospondin type 1 repeats
    cd04273
    Location:249 → 466
    ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
    pfam01562
    Location:50 → 172
    Pep_M12B_propep; Reprolysin family propeptide
    pfam17771
    Location:483 → 550
    ADAM_CR_2; ADAM cysteine-rich domain
Nucleotide Protein
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