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afg3l1 AFG3-like AAA ATPase 1 [ Gadus morhua (Atlantic cod) ]

Gene ID: 115550725, updated on 17-Mar-2024

Summary

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Gene symbol
afg3l1
Gene description
AFG3-like AAA ATPase 1
See related
Ensembl:ENSGMOG00000003907
Gene type
protein coding
RefSeq status
MODEL
Organism
Gadus morhua
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
Also known as
si:ch1073-174d20.2
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 9
Exon count:
16
Annotation release Status Assembly Chr Location
100 current gadMor3.0 (GCF_902167405.1) 9 NC_044056.1 (12414786..12424312, complement)

Chromosome 9 - NC_044056.1Genomic Context describing neighboring genes Neighboring gene myoblast determination protein 1 homolog Neighboring gene voltage-dependent calcium channel subunit alpha-2/delta-4-like Neighboring gene leucine-rich repeat and transmembrane domain-containing protein 2-like Neighboring gene fer-1 like family member 4 Neighboring gene uncharacterized LOC115551401

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044056.1 Chromosome 9 Reference gadMor3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent peptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial protein processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein-containing complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of m-AAA complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AFG3-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference gadMor3.0 Primary Assembly

Genomic

  1. NC_044056.1 Reference gadMor3.0 Primary Assembly

    Range
    12414786..12424312 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030366005.1 → XP_030221865.1  AFG3-like protein 1

    UniProtKB/TrEMBL
    A0A8C5C4X5, A0A8C5CT19
    Related
    ENSGMOP00000062736.1, ENSGMOT00000072392.1
    Conserved Domains (1) summary
    TIGR01241
    Location:239 → 730
    FtsH_fam; ATP-dependent metalloprotease FtsH
Nucleotide Protein
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