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ankrd55 ankyrin repeat domain 55 [ Salmo trutta (river trout) ]

Gene ID: 115160087, updated on 17-Mar-2024

Summary

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Gene symbol
ankrd55
Gene description
ankyrin repeat domain 55
See related
Ensembl:ENSSTUG00000012895
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 23
Exon count:
11
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 23 NC_042979.1 (42085627..42104156, complement)

Chromosome 23 - NC_042979.1Genomic Context describing neighboring genes Neighboring gene interleukin-31 receptor subunit alpha-like Neighboring gene interleukin-6 receptor subunit beta-like Neighboring gene mitogen-activated protein kinase kinase kinase 1, E3 ubiquitin protein ligase Neighboring gene NACHT, LRR and PYD domains-containing protein 3-like Neighboring gene uncharacterized LOC115160090

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042979.1 Chromosome 23 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ankyrin repeat domain-containing protein 55

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042979.1 Reference fSalTru1.1 Primary Assembly

    Range
    42085627..42104156 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029710379.1 → XP_029566239.1  ankyrin repeat domain-containing protein 55

    UniProtKB/TrEMBL
    A0A673Y5Q1
    Related
    ENSSTUP00000029845.1, ENSSTUT00000031229.1
    Conserved Domains (3) summary
    PHA03095
    Location:13 → 305
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:87 → 117
    ANK; ANK repeat [structural motif]
    pfam15240
    Location:314 → 460
    Pro-rich; Proline-rich
Nucleotide Protein
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