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ATG4B autophagy related 4B cysteine peptidase [ Rhinatrema bivittatum (two-lined caecilian) ]

Gene ID: 115099060, updated on 17-Mar-2024

Summary

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Gene symbol
ATG4B
Gene description
autophagy related 4B cysteine peptidase
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinatrema bivittatum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Rhinatrematidae; Rhinatrema
Orthologs
human mouse all
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Genomic context

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See ATG4B in Genome Data Viewer
Location:
chromosome: 9
Exon count:
15
Annotation release Status Assembly Chr Location
100 current aRhiBiv1.1 (GCF_901001135.1) 9 NC_042623.1 (169382610..169503365)

Chromosome 9 - NC_042623.1Genomic Context describing neighboring genes Neighboring gene serine/threonine kinase 25 Neighboring gene BCL2 family apoptosis regulator BOK Neighboring gene THAP domain containing 4 Neighboring gene deoxythymidylate kinase Neighboring gene inhibitor of growth family member 5 Neighboring gene D-2-hydroxyglutarate dehydrogenase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042623.1 Chromosome 9 Reference aRhiBiv1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-phosphatidylethanolamide deconjugating activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cysteine protease ATG4B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhinatrema bivittatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aRhiBiv1.1 Primary Assembly

Genomic

  1. NC_042623.1 Reference aRhiBiv1.1 Primary Assembly

    Range
    169382610..169503365
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029616354.1 → XP_029472214.1  cysteine protease ATG4B isoform X8

  2. XM_029616349.1 → XP_029472209.1  cysteine protease ATG4B isoform X4

    Conserved Domains (1) summary
    pfam03416
    Location:40 → 336
    Peptidase_C54; Peptidase family C54

  3. XM_029616351.1 → XP_029472211.1  cysteine protease ATG4B isoform X6

  4. XM_029616352.1 → XP_029472212.1  cysteine protease ATG4B isoform X7

  5. XM_029616347.1 → XP_029472207.1  cysteine protease ATG4B isoform X2

  6. XM_029616350.1 → XP_029472210.1  cysteine protease ATG4B isoform X5

  7. XM_029616346.1 → XP_029472206.1  cysteine protease ATG4B isoform X1

  8. XM_029616348.1 → XP_029472208.1  cysteine protease ATG4B isoform X3

Nucleotide Protein
Heading Accession and Version

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