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ADAMTS16 ADAM metallopeptidase with thrombospondin type 1 motif 16 [ Rhinatrema bivittatum (two-lined caecilian) ]

Gene ID: 115084740, updated on 17-Mar-2024

Summary

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Gene symbol
ADAMTS16
Gene description
ADAM metallopeptidase with thrombospondin type 1 motif 16
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinatrema bivittatum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Rhinatrematidae; Rhinatrema
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
24
Annotation release Status Assembly Chr Location
100 current aRhiBiv1.1 (GCF_901001135.1) 2 NC_042616.1 (381867456..382673997)

Chromosome 2 - NC_042616.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115084738 Neighboring gene elongator acetyltransferase complex subunit 2 Neighboring gene gamma-aminobutyric acid type B receptor subunit 2 Neighboring gene uncharacterized LOC115084739 Neighboring gene transfer RNA leucine (anticodon CAA) Neighboring gene uncharacterized LOC115086138 Neighboring gene interactor of little elongation complex ELL subunit 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042616.1 Chromosome 2 Reference aRhiBiv1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: A disintegrin and metalloproteinase with thrombospondin motifs 16

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhinatrema bivittatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aRhiBiv1.1 Primary Assembly

Genomic

  1. NC_042616.1 Reference aRhiBiv1.1 Primary Assembly

    Range
    381867456..382673997
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029589991.1 → XP_029445851.1  LOW QUALITY PROTEIN: A disintegrin and metalloproteinase with thrombospondin motifs 16

    Conserved Domains (6) summary
    smart00209
    Location:580 → 631
    TSP1; Thrombospondin type 1 repeats
    cd04273
    Location:277 → 478
    ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
    pfam01562
    Location:41 → 185
    Pep_M12B_propep; Reprolysin family propeptide
    pfam05986
    Location:737 → 849
    ADAM_spacer1; ADAM-TS Spacer 1
    pfam08686
    Location:1181 → 1211
    PLAC; PLAC (protease and lacunin) domain
    pfam17771
    Location:495 → 565
    ADAM_CR_2; ADAM cysteine-rich domain
Nucleotide Protein
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