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ATF5 activating transcription factor 5 [ Rhinatrema bivittatum (two-lined caecilian) ]

Gene ID: 115080887, updated on 17-Mar-2024

Summary

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Gene symbol
ATF5
Gene description
activating transcription factor 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinatrema bivittatum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Rhinatrematidae; Rhinatrema
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 19
Exon count:
3
Annotation release Status Assembly Chr Location
100 current aRhiBiv1.1 (GCF_901001135.1) 19 NC_042633.1 (19076614..19081017, complement)

Chromosome 19 - NC_042633.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein ZSWIM9-like Neighboring gene DNA ligase 1 Neighboring gene serine/threonine-protein kinase SBK1-like Neighboring gene zinc finger protein 628

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042633.1 Chromosome 19 Reference aRhiBiv1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cyclic AMP-dependent transcription factor ATF-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhinatrema bivittatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aRhiBiv1.1 Primary Assembly

Genomic

  1. NC_042633.1 Reference aRhiBiv1.1 Primary Assembly

    Range
    19076614..19081017 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029585347.1 → XP_029441207.1  cyclic AMP-dependent transcription factor ATF-5

    Conserved Domains (1) summary
    cd14692
    Location:241 → 303
    bZIP_ATF4; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-4 (ATF-4) and similar proteins: a DNA-binding and dimerization domain
Nucleotide Protein
Heading Accession and Version

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