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AQR aquarius intron-binding spliceosomal factor [ Monodon monoceros (narwhal) ]

Gene ID: 114904145, updated on 15-Mar-2024

Summary

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Gene symbol
AQR
Gene description
aquarius intron-binding spliceosomal factor
See related
Ensembl:ENSMMNG00015007904
Gene type
protein coding
RefSeq status
MODEL
Organism
Monodon monoceros
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Monodontidae; Monodon
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
39
Annotation release Status Assembly Chr Location
100 current NGI_Narwhal_1 (GCF_005190385.1) Unplaced Scaffold NW_021703778.1 (96562150..96682372)

NW_021703778.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114903427 Neighboring gene zinc finger protein 770 Neighboring gene actin alpha cardiac muscle 1 Neighboring gene gap junction protein delta 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_021703778 Unplaced Scaffold Reference NGI_Narwhal_1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA helicase aquarius

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Monodon monoceros Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NGI_Narwhal_1

Genomic

  1. NW_021703778.1 Reference NGI_Narwhal_1

    Range
    96562150..96682372
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029237655.1 → XP_029093488.1  RNA helicase aquarius isoform X1

    UniProtKB/TrEMBL
    A0A8C6B3T1
    Related
    ENSMMNP00015010663.1, ENSMMNT00015011671.1
    Conserved Domains (3) summary
    cd18808
    Location:1140 → 1323
    SF1_C_Upf1; C-terminal helicase domain of Upf1-like family helicases
    cd17935
    Location:797 → 1152
    EEXXQc_AQR; EEXXQ-box helicase domain of AQR
    pfam16399
    Location:18 → 802
    Aquarius_N; Intron-binding protein aquarius N-terminus

  2. XM_029237658.1 → XP_029093491.1  RNA helicase aquarius isoform X1

    UniProtKB/TrEMBL
    A0A8C6B3T1
    Conserved Domains (3) summary
    cd18808
    Location:1140 → 1323
    SF1_C_Upf1; C-terminal helicase domain of Upf1-like family helicases
    cd17935
    Location:797 → 1152
    EEXXQc_AQR; EEXXQ-box helicase domain of AQR
    pfam16399
    Location:18 → 802
    Aquarius_N; Intron-binding protein aquarius N-terminus

  3. XM_029237656.1 → XP_029093489.1  RNA helicase aquarius isoform X1

    UniProtKB/TrEMBL
    A0A8C6B3T1
    Conserved Domains (3) summary
    cd18808
    Location:1140 → 1323
    SF1_C_Upf1; C-terminal helicase domain of Upf1-like family helicases
    cd17935
    Location:797 → 1152
    EEXXQc_AQR; EEXXQ-box helicase domain of AQR
    pfam16399
    Location:18 → 802
    Aquarius_N; Intron-binding protein aquarius N-terminus

  4. XM_029237659.1 → XP_029093492.1  RNA helicase aquarius isoform X2

    UniProtKB/TrEMBL
    A0A8C6B3T1
    Conserved Domains (3) summary
    pfam16399
    Location:1 → 646
    Aquarius_N; Intron-binding protein aquarius N-terminus
    cd18808
    Location:984 → 1167
    SF1_C_Upf1; C-terminal helicase domain of Upf1-like family helicases
    cd17935
    Location:641 → 996
    EEXXQc_AQR; EEXXQ-box helicase domain of AQR

RNA

  1. XR_003795862.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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