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atg10 ATG10 autophagy related 10 homolog (S. cerevisiae) [ Tachysurus fulvidraco (yellow catfish) ]

Gene ID: 113638321, updated on 10-Apr-2024

Summary

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Gene symbol
atg10
Gene description
ATG10 autophagy related 10 homolog (S. cerevisiae)
See related
EnsemblRapid:ENSTFUG00005005404
Gene type
protein coding
RefSeq status
MODEL
Organism
Tachysurus fulvidraco
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Bagridae; Tachysurus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 20
Exon count:
9
Annotation release Status Assembly Chr Location
101 current HZAU_PFXX_2.0 (GCF_022655615.1) 20 NC_062537.1 (6844817..6864489, complement)
100 previous assembly ASM372403v1 (GCF_003724035.1) Unplaced Scaffold NW_020848277.1 (3345253..3364969, complement)

Chromosome 20 - NC_062537.1Genomic Context describing neighboring genes Neighboring gene hyaluronan and proteoglycan link protein 1b Neighboring gene X-ray repair complementing defective repair in Chinese hamster cells 4 Neighboring gene transmembrane protein 167A Neighboring gene zinc finger, CCHC domain containing 9 Neighboring gene EKC/KEOPS complex subunit LAGE3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Zinc reduces hepatic lipid deposition and activates lipophagy via Zn(2+)/MTF-1/PPARα and Ca(2+)/CaMKKβ/AMPK pathways. Wei CC, et al. FASEB J, 2018 Jun 18. PMID 29912588

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Atg12 transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in macroautophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein lipidation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein modification by small protein conjugation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin-like-conjugating enzyme ATG10
Names
autophagy related 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tachysurus fulvidraco Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HZAU_PFXX_2.0

Genomic

  1. NC_062537.1 Reference HZAU_PFXX_2.0

    Range
    6844817..6864489 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027139378.2 → XP_026995179.1  ubiquitin-like-conjugating enzyme ATG10 isoform X1

  2. XM_027139380.2 → XP_026995181.1  ubiquitin-like-conjugating enzyme ATG10 isoform X2

    UniProtKB/TrEMBL
    A0A3T0TV75
    Related
    ENSTFUP00005011326.1, ENSTFUT00005013917.1

  3. XM_027139379.2 → XP_026995180.1  ubiquitin-like-conjugating enzyme ATG10 isoform X2

    UniProtKB/TrEMBL
    A0A3T0TV75

  4. XM_027139377.2 → XP_026995178.1  ubiquitin-like-conjugating enzyme ATG10 isoform X1

  5. XM_047804875.1 → XP_047660831.1  ubiquitin-like-conjugating enzyme ATG10 isoform X1

  6. XM_027139374.2 → XP_026995175.1  ubiquitin-like-conjugating enzyme ATG10 isoform X1

  7. XM_027139381.2 → XP_026995182.1  ubiquitin-like-conjugating enzyme ATG10 isoform X3

  8. XM_027139382.2 → XP_026995183.1  ubiquitin-like-conjugating enzyme ATG10 isoform X4

  9. XM_027139375.2 → XP_026995176.1  ubiquitin-like-conjugating enzyme ATG10 isoform X1

  10. XM_047804874.1 → XP_047660830.1  ubiquitin-like-conjugating enzyme ATG10 isoform X1

    Related
    ENSTFUP00005011333.1, ENSTFUT00005013924.1
Nucleotide Protein
Heading Accession and Version

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