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abt1 activator of basal transcription 1 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112158921, updated on 15-Mar-2024

Summary

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Gene symbol
abt1
Gene description
activator of basal transcription 1
See related
Ensembl:ENSOMEG00000011593
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG7
Exon count:
7
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG7 NC_050518.1 (24981003..24985703, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096096.1 (30911240..30915952, complement)

Linkage Group LG7 - NC_050518.1Genomic Context describing neighboring genes Neighboring gene transcription factor binding to IGHM enhancer 3a Neighboring gene FYVE, RhoGEF and PH domain containing 1 Neighboring gene uncharacterized LOC112158932 Neighboring gene RAD51 paralog C Neighboring gene glutamate receptor, metabotropic 6a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in small-subunit processome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
activator of basal transcription 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050518.1 Reference ASM292280v2 Primary Assembly

    Range
    24981003..24985703 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024292623.2 → XP_024148391.1  activator of basal transcription 1 isoform X1

    UniProtKB/TrEMBL
    A0A3B3DG81
    Conserved Domains (1) summary
    cd12263
    Location:112 → 208
    RRM_ABT1_like; RNA recognition motif found in activator of basal transcription 1 (ABT1) and similar proteins

  2. XM_024292624.2 → XP_024148392.1  activator of basal transcription 1 isoform X2

    UniProtKB/TrEMBL
    A0A3B3DG81
    Related
    ENSOMEP00000028489.1
    Conserved Domains (1) summary
    cd12263
    Location:61 → 157
    RRM_ABT1_like; RNA recognition motif found in activator of basal transcription 1 (ABT1) and similar proteins

  3. XM_024292625.2 → XP_024148393.1  activator of basal transcription 1 isoform X2

    UniProtKB/TrEMBL
    A0A3B3DG81
    Conserved Domains (1) summary
    cd12263
    Location:61 → 157
    RRM_ABT1_like; RNA recognition motif found in activator of basal transcription 1 (ABT1) and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

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