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abcc1 ATP binding cassette subfamily C member 1 (ABCC1 blood group) [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112146142, updated on 15-Mar-2024

Summary

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Gene symbol
abcc1
Gene description
ATP binding cassette subfamily C member 1 (ABCC1 blood group)
See related
Ensembl:ENSOMEG00000013329
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG8
Exon count:
32
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG8 NC_050519.1 (24145245..24183245, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096082.1 (308275..346285)

Linkage Group LG8 - NC_050519.1Genomic Context describing neighboring genes Neighboring gene small nuclear ribonucleoprotein 70 (U1) Neighboring gene SR-related CTD-associated factor 1 Neighboring gene adaptor related protein complex 2 subunit alpha 1 Neighboring gene dual specificity protein phosphatase 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Marine medaka ATP-binding cassette (ABC) superfamily and new insight into teleost Abch nomenclature. Jeong CB, et al. Sci Rep, 2015 Oct 16. PMID 26472499, Free PMC Article
  2. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type xenobiotic transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glutathione transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glutathione transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xenobiotic transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basolateral plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
multidrug resistance-associated protein 1
Names
ATP-binding cassette, sub-family C (CFTR/MRP), member 1
multidrug resistance-associated protein 1/ATP-binding cassette sub-family C member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050519.1 Reference ASM292280v2 Primary Assembly

    Range
    24145245..24183245 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024271825.2 → XP_024127593.1  multidrug resistance-associated protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A0U3IAN5, A0A3B3DH39
    Related
    ENSOMEP00000029417.1
    Conserved Domains (1) summary
    cl26602
    Location:7 → 1510
    SunT; ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

  2. XM_024271824.2 → XP_024127592.1  multidrug resistance-associated protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A3B3C1J9, A0A3B3DH39
    Related
    ENSOMEP00000011816.1
    Conserved Domains (1) summary
    cl26602
    Location:7 → 1511
    SunT; ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

  3. XM_024271823.2 → XP_024127591.1  multidrug resistance-associated protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A3B3DH39
    Conserved Domains (1) summary
    cl26602
    Location:7 → 1527
    SunT; ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

  4. XM_024271822.2 → XP_024127590.1  multidrug resistance-associated protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3B3DHX4, A0A3B3DIY1
    Related
    ENSOMEP00000029491.1
    Conserved Domains (1) summary
    cl26602
    Location:7 → 1528
    SunT; ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Nucleotide Protein Strain
Heading Accession and Version

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