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LOC110439268 E3 ubiquitin-protein ligase RBBP6-like [ Danio rerio (zebrafish) ]

Gene ID: 110439268, updated on 18-Aug-2023

Summary

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Gene symbol
LOC110439268
Gene description
E3 ubiquitin-protein ligase RBBP6-like
See related
Ensembl:ENSDARG00000077475
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
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Genomic context

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See LOC110439268 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (12703557..12716284, complement)

Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase RBBP6-like Neighboring gene uncharacterized LOC110439282 Neighboring gene zgc:91850 Neighboring gene E3 ubiquitin-protein ligase RBBP6-like Neighboring gene adaptor related protein complex 1 subunit sigma 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RBBP6-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007122.7 Reference GRCz11 Primary Assembly

    Range
    12703557..12716284 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021479961.1 → XP_021335636.1  E3 ubiquitin-protein ligase RBBP6-like isoform X3

    UniProtKB/TrEMBL
    A0A8M9QIF4
    Conserved Domains (1) summary
    pfam08783
    Location:9 → 40
    DWNN; DWNN domain

  2. XM_021479960.1 → XP_021335635.1  E3 ubiquitin-protein ligase RBBP6-like isoform X1

    UniProtKB/TrEMBL
    A0A0R4ITK7, A0A8M9QM88
    Related
    ENSDARP00000139367.1, ENSDART00000158937.2
    Conserved Domains (1) summary
    pfam08783
    Location:4 → 73
    DWNN; DWNN domain

  3. XM_021479962.1 → XP_021335637.1  E3 ubiquitin-protein ligase RBBP6-like isoform X2

    UniProtKB/TrEMBL
    A0A8M9PVX2, A0A8M9QHZ0
    Conserved Domains (1) summary
    cl26688
    Location:12 → 61
    DWNN; DWNN domain

RNA

  1. XR_002459701.1 RNA Sequence

Reference GRCz11 ALT_DRER_TU_3

Genomic

  1. NW_018395384.1 Reference GRCz11 ALT_DRER_TU_3

    Range
    421534..423905 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021474636.1 → XP_021330311.1  E3 ubiquitin-protein ligase RBBP6-like isoform X1

    UniProtKB/TrEMBL
    A0A0R4ITK7, A0A8M9QM88
    Conserved Domains (1) summary
    pfam08783
    Location:4 → 73
    DWNN; DWNN domain

RNA

  1. XR_002458019.1 RNA Sequence

Reference GRCz11 ALT_DRER_TU_4

Genomic

  1. NW_018395388.1 Reference GRCz11 ALT_DRER_TU_4

    Range
    269159..269980 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_002458045.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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