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LOC110438397 uncharacterized LOC110438397 [ Danio rerio (zebrafish) ]

Gene ID: 110438397, updated on 15-Mar-2024

Summary

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Gene symbol
LOC110438397
Gene description
uncharacterized LOC110438397
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Annotation information
Annotation category: partial on reference assembly
Orthologs
all
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Genomic context

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See LOC110438397 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
2
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (36527643..36527914, complement)

Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene ankyrin repeat domain 27 (VPS9 domain) Neighboring gene iroquois homeobox 3b Neighboring gene MAF bZIP transcription factor b Neighboring gene WW domain containing oxidoreductase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007136.7 Chromosome 25 Reference GRCz11 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein LOC110438397

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007136.7 Reference GRCz11 Primary Assembly

    Range
    36527643..36527914 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021470709.1 → XP_021326384.1  uncharacterized protein LOC110438397

    UniProtKB/TrEMBL
    A0A8M9PNC4
    Conserved Domains (3) summary
    cd00204
    Location:210 → 310
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:234 → 262
    ANK; ANK repeat [structural motif]
    cl26072
    Location:132 → 282
    Ank_5; Ankyrin repeats (many copies)
Nucleotide Protein Strain
Heading Accession and Version

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