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abtb1 ankyrin repeat and BTB (POZ) domain containing 1 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109869010, updated on 14-Mar-2024

Summary

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Gene symbol
abtb1
Gene description
ankyrin repeat and BTB (POZ) domain containing 1
See related
Ensembl:ENSOKIG00005013075
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG24
Exon count:
14
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG24 NC_034197.2 (29152753..29161804)
100 previous assembly Okis_V1 (GCF_002021735.1) LG24 NC_034197.1 (29096959..29105645)

Linkage Group LG24 - NC_034197.2Genomic Context describing neighboring genes Neighboring gene NACHT, LRR and PYD domains-containing protein 3 Neighboring gene intermediate filament protein ON3 Neighboring gene sodium- and chloride-dependent taurine transporter Neighboring gene glutamate receptor-interacting protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ankyrin repeat and BTB/POZ domain-containing protein 1
Names
ankyrin repeat and BTB domain containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034197.2 Reference Okis_V2 Primary Assembly

    Range
    29152753..29161804
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031803451.1 → XP_031659311.1  ankyrin repeat and BTB/POZ domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C7FNF9
    Related
    ENSOKIP00005030370.1, ENSOKIT00005032104.1
    Conserved Domains (5) summary
    sd00045
    Location:18 → 43
    ANK; ANK repeat [structural motif]
    cd18295
    Location:79 → 197
    BTB1_POZ_ABTB1_BPOZ1; first BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Ankyrin repeat and BTB/POZ domain-containing protein 1 (ABTB1)
    cd18296
    Location:235 → 358
    BTB2_POZ_ABTB1_BPOZ1; second BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Ankyrin repeat and BTB/POZ domain-containing protein 1 (ABTB1)
    cd18497
    Location:357 → 428
    BACK_ABTB1_BPOZ; BACK (BTB and C-terminal Kelch) domain found in ankyrin repeat and BTB/POZ domain-containing protein 1 (ABTB1)
    pfam13857
    Location:4 → 53
    Ank_5; Ankyrin repeats (many copies)

  2. XM_020458820.2 → XP_020314409.1  ankyrin repeat and BTB/POZ domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C7FMG7, A0A8C7FNF9
    Related
    ENSOKIP00005030397.1, ENSOKIT00005032132.1
    Conserved Domains (5) summary
    sd00045
    Location:6 → 33
    ANK; ANK repeat [structural motif]
    cd18295
    Location:96 → 214
    BTB1_POZ_ABTB1_BPOZ1; first BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Ankyrin repeat and BTB/POZ domain-containing protein 1 (ABTB1)
    cd18296
    Location:252 → 375
    BTB2_POZ_ABTB1_BPOZ1; second BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Ankyrin repeat and BTB/POZ domain-containing protein 1 (ABTB1)
    cd18497
    Location:374 → 445
    BACK_ABTB1_BPOZ; BACK (BTB and C-terminal Kelch) domain found in ankyrin repeat and BTB/POZ domain-containing protein 1 (ABTB1)
    pfam12796
    Location:6 → 94
    Ank_2; Ankyrin repeats (3 copies)

  3. XM_031803452.1 → XP_031659312.1  ankyrin repeat and BTB/POZ domain-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C7FNF9
    Conserved Domains (3) summary
    cd18295
    Location:24 → 142
    BTB1_POZ_ABTB1_BPOZ1; first BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Ankyrin repeat and BTB/POZ domain-containing protein 1 (ABTB1)
    cd18296
    Location:180 → 303
    BTB2_POZ_ABTB1_BPOZ1; second BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Ankyrin repeat and BTB/POZ domain-containing protein 1 (ABTB1)
    cd18497
    Location:302 → 373
    BACK_ABTB1_BPOZ; BACK (BTB and C-terminal Kelch) domain found in ankyrin repeat and BTB/POZ domain-containing protein 1 (ABTB1)
Nucleotide Protein
Heading Accession and Version

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