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flacc1 flagellum associated containing coiled-coil domains 1 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109866955, updated on 14-Dec-2023

Summary

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Gene symbol
flacc1
Gene description
flagellum associated containing coiled-coil domains 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Also known as
als2cr12
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Genomic context

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Location:
chromosome: LG2
Exon count:
6
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG2 NC_034175.2 (44611063..44613434)
100 previous assembly Okis_V1 (GCF_002021735.1) LG2 NC_034175.1 (42952574..42962099)

Linkage Group LG2 - NC_034175.2Genomic Context describing neighboring genes Neighboring gene oxysterol binding protein-like 6 Neighboring gene protein kinase, interferon-inducible double stranded RNA dependent activator Neighboring gene caspase 10, apoptosis-related cysteine peptidase Neighboring gene disintegrin and metalloproteinase domain-containing protein 23 Neighboring gene family with sequence similarity 237 member A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
flagellum-associated coiled-coil domain-containing protein 1
Names
ALS2 chromosome region 12
amyotrophic lateral sclerosis 2 chromosome region 12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034175.2 Reference Okis_V2 Primary Assembly

    Range
    44611063..44613434
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031795434.1 → XP_031651294.1  flagellum-associated coiled-coil domain-containing protein 1

    Conserved Domains (1) summary
    pfam01540
    Location:71 → 139
    Lipoprotein_7; Adhesin lipoprotein

  2. XM_031795439.1 → XP_031651299.1  flagellum-associated coiled-coil domain-containing protein 1

    Conserved Domains (1) summary
    pfam01540
    Location:71 → 139
    Lipoprotein_7; Adhesin lipoprotein
Nucleotide Protein
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