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Ankrd27 ankyrin repeat domain 27 [ Castor canadensis (American beaver) ]

Gene ID: 109698089, updated on 14-Mar-2024

Summary

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Gene symbol
Ankrd27
Gene description
ankyrin repeat domain 27
Gene type
protein coding
RefSeq status
MODEL
Organism
Castor canadensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Castoridae; Castor
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
29
Annotation release Status Assembly Chr Location
100 current C.can genome v1.0 (GCF_001984765.1) Unplaced Scaffold NW_017872191.1 (231337..279090)

NW_017872191.1Genomic Context describing neighboring genes Neighboring gene nudix hydrolase 19 Neighboring gene regulator of G protein signaling 9 binding protein Neighboring gene programmed cell death 5 Neighboring gene dpy-19 like C-mannosyltransferase 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017872191.1 Unplaced Scaffold Reference C.can genome v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Genome and Transcriptome Assembly of the Canadian Beaver (Castor canadensis). Lok S, et al. G3 (Bethesda), 2017 Feb 9. PMID 28087693, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in early endosome to late endosome transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron projection morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in early endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in late endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in tubular endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ankyrin repeat domain-containing protein 27

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Castor canadensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.can genome v1.0

Genomic

  1. NW_017872191.1 Reference C.can genome v1.0

    Range
    231337..279090
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020182055.1 → XP_020037644.1  ankyrin repeat domain-containing protein 27 isoform X1

    UniProtKB/TrEMBL
    A0A250YM17, A0A8B7W1T0
    Conserved Domains (5) summary
    cd00204
    Location:738 → 863
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:743 → 774
    ANK; ANK repeat [structural motif]
    pfam02204
    Location:264 → 363
    VPS9; Vacuolar sorting protein 9 (VPS9) domain
    pfam12796
    Location:404 → 493
    Ank_2; Ankyrin repeats (3 copies)
    cl26072
    Location:826 → 904
    Ank_5; Ankyrin repeats (many copies)

  2. XM_020182057.1 → XP_020037646.1  ankyrin repeat domain-containing protein 27 isoform X2

    UniProtKB/TrEMBL
    A0A250YM17, A0A8B7W0E8
    Conserved Domains (5) summary
    cd00204
    Location:718 → 843
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:723 → 754
    ANK; ANK repeat [structural motif]
    pfam02204
    Location:264 → 363
    VPS9; Vacuolar sorting protein 9 (VPS9) domain
    pfam12796
    Location:404 → 493
    Ank_2; Ankyrin repeats (3 copies)
    cl26073
    Location:567 → 876
    Ank_2; Ankyrin repeats (3 copies)

  3. XM_020182059.1 → XP_020037648.1  ankyrin repeat domain-containing protein 27 isoform X4

    UniProtKB/TrEMBL
    A0A8B7W191
    Conserved Domains (1) summary
    cl19569
    Location:264 → 363
    VPS9; Vacuolar sorting protein 9 (VPS9) domain

  4. XM_020182058.1 → XP_020037647.1  ankyrin repeat domain-containing protein 27 isoform X3

    UniProtKB/TrEMBL
    A0A8B7W127
    Conserved Domains (1) summary
    cl19569
    Location:264 → 363
    VPS9; Vacuolar sorting protein 9 (VPS9) domain

  5. XM_020182056.1 → XP_020037645.1  ankyrin repeat domain-containing protein 27 isoform X1

    UniProtKB/TrEMBL
    A0A250YM17, A0A8B7W1T0
    Conserved Domains (5) summary
    cd00204
    Location:738 → 863
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:743 → 774
    ANK; ANK repeat [structural motif]
    pfam02204
    Location:264 → 363
    VPS9; Vacuolar sorting protein 9 (VPS9) domain
    pfam12796
    Location:404 → 493
    Ank_2; Ankyrin repeats (3 copies)
    cl26072
    Location:826 → 904
    Ank_5; Ankyrin repeats (many copies)

RNA

  1. XR_002213522.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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