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Atp6v0d1 ATPase H+ transporting V0 subunit d1 [ Castor canadensis (American beaver) ]

Gene ID: 109691245, updated on 14-Mar-2024

Summary

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Gene symbol
Atp6v0d1
Gene description
ATPase H+ transporting V0 subunit d1
See related
Ensembl:ENSCCNG00000014733
Gene type
protein coding
RefSeq status
MODEL
Organism
Castor canadensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Castoridae; Castor
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current C.can genome v1.0 (GCF_001984765.1) Unplaced Scaffold NW_017871096.1 (136956..176659, complement)

NW_017871096.1Genomic Context describing neighboring genes Neighboring gene zinc finger DHHC-type containing 1 Neighboring gene 60S ribosomal protein L35a pseudogene Neighboring gene hydroxysteroid 11-beta dehydrogenase 2 Neighboring gene agouti related neuropeptide Neighboring gene RHO family interacting cell polarization regulator 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017871096.1 Unplaced Scaffold Reference C.can genome v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Genome and Transcriptome Assembly of the Canadian Beaver (Castor canadensis). Lok S, et al. G3 (Bethesda), 2017 Feb 9. PMID 28087693, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables proton-transporting ATPase activity, rotational mechanism IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vacuolar acidification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vacuolar transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in early endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of plasma membrane proton-transporting V-type ATPase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of proton-transporting V-type ATPase, V0 domain IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of vacuolar proton-transporting V-type ATPase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
V-type proton ATPase subunit d 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Castor canadensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.can genome v1.0

Genomic

  1. NW_017871096.1 Reference C.can genome v1.0

    Range
    136956..176659 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020171109.1 → XP_020026698.1  V-type proton ATPase subunit d 1

    UniProtKB/TrEMBL
    A0A250YG62
    Related
    ENSCCNP00000014237.1, ENSCCNT00000018673.1
    Conserved Domains (1) summary
    pfam01992
    Location:16 → 344
    vATP-synt_AC39; ATP synthase (C/AC39) subunit
Nucleotide Protein
Heading Accession and Version

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