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Alkbh4 alkB homolog 4, lysine demethylase [ Castor canadensis (American beaver) ]

Gene ID: 109681586, updated on 14-Mar-2024

Summary

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Gene symbol
Alkbh4
Gene description
alkB homolog 4, lysine demethylase
See related
Ensembl:ENSCCNG00000017586
Gene type
protein coding
RefSeq status
MODEL
Organism
Castor canadensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Castoridae; Castor
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current C.can genome v1.0 (GCF_001984765.1) Unplaced Scaffold NW_017869879.1 (577002..584855)

NW_017869879.1Genomic Context describing neighboring genes Neighboring gene RNA polymerase II subunit J Neighboring gene leucine rich repeats and WD repeat domain containing 1 Neighboring gene ORAI calcium release-activated calcium modulator 2 Neighboring gene PRKR interacting protein 1 Neighboring gene SH2B adaptor protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017869879.1 Unplaced Scaffold Reference C.can genome v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Genome and Transcriptome Assembly of the Canadian Beaver (Castor canadensis). Lok S, et al. G3 (Bethesda), 2017 Feb 9. PMID 28087693, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actomyosin structure organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in oxidative demethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein demethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in contractile ring IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in midbody IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-ketoglutarate-dependent dioxygenase alkB homolog 4
Names
alpha-ketoglutarate-dependent dioxygenase alkB 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Castor canadensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.can genome v1.0

Genomic

  1. NW_017869879.1 Reference C.can genome v1.0

    Range
    577002..584855
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020156412.1 → XP_020012001.1  alpha-ketoglutarate-dependent dioxygenase alkB homolog 4

    UniProtKB/TrEMBL
    A0A8C0WWW7
    Related
    ENSCCNP00000017278.1, ENSCCNT00000022496.1
Nucleotide Protein
Heading Accession and Version

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