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abt1 activator of basal transcription 1 [ Hippocampus comes (tiger tail seahorse) ]

Gene ID: 109510432, updated on 14-Mar-2024

Summary

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Gene symbol
abt1
Gene description
activator of basal transcription 1
See related
Ensembl:ENSHCOG00000003610
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippocampus comes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Hippocampus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current H_comes_QL1_v1 (GCF_001891065.1) Unplaced Scaffold NW_017842056.1 (919417..922561, complement)

NW_017842056.1Genomic Context describing neighboring genes Neighboring gene glutamate receptor, metabotropic 6a Neighboring gene cyclin-dependent kinase 16-like Neighboring gene suppressor of tumorigenicity 14 protein homolog Neighboring gene RAD51 paralog C Neighboring gene potassium voltage-gated channel subfamily D member 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017842056.1 Unplaced Scaffold Reference H_comes_QL1_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in small-subunit processome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
activator of basal transcription 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippocampus comes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference H_comes_QL1_v1 Primary Assembly

Genomic

  1. NW_017842056.1 Reference H_comes_QL1_v1 Primary Assembly

    Range
    919417..922561 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019860748.1 → XP_019716307.1  activator of basal transcription 1

    UniProtKB/TrEMBL
    A0A3Q2XDN5
    Related
    ENSHCOP00000002470.1, ENSHCOT00000010362.1
    Conserved Domains (1) summary
    cd12263
    Location:144 → 240
    RRM_ABT1_like; RNA recognition motif found in activator of basal transcription 1 (ABT1) and similar proteins

  2. XM_019860750.1 → XP_019716309.1  activator of basal transcription 1

    UniProtKB/TrEMBL
    A0A3Q2XDN5
    Conserved Domains (1) summary
    cd12263
    Location:144 → 240
    RRM_ABT1_like; RNA recognition motif found in activator of basal transcription 1 (ABT1) and similar proteins

  3. XM_019860749.1 → XP_019716308.1  activator of basal transcription 1

    UniProtKB/TrEMBL
    A0A3Q2XDN5
    Conserved Domains (1) summary
    cd12263
    Location:144 → 240
    RRM_ABT1_like; RNA recognition motif found in activator of basal transcription 1 (ABT1) and similar proteins
Nucleotide Protein
Heading Accession and Version

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