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LOC109363677 Bmp3 5' regulatory region [ Mus musculus (house mouse) ]

Gene ID: 109363677, updated on 8-Feb-2024

Summary

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Gene symbol
LOC109363677
Gene description
Bmp3 5' regulatory region
Gene type
biological region
Feature type(s)
regulatory: promoter, silencer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rr366784
Summary
This region encompasses the proximal promoter as well as a highly conserved upstream negative regulatory element of the bone morphogenetic protein 3 gene. [provided by RefSeq, Dec 2016]
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Genomic context

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Location:
chromosome: 5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (99000656..99002361)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (98852797..98854502)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene cilia and flagella associated protein 299 Neighboring gene RIKEN cDNA 1700010H22 gene Neighboring gene STARR-seq mESC enhancer starr_13703 Neighboring gene predicted gene, 42122 Neighboring gene predicted gene, 34563 Neighboring gene STARR-seq mESC enhancer starr_13704 Neighboring gene STARR-seq mESC enhancer starr_13705 Neighboring gene predicted gene, 42123 Neighboring gene bone morphogenetic protein 3 Neighboring gene protein kinase, cGMP-dependent, type II Neighboring gene predicted gene 3470

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative genomics identifies the mouse Bmp3 promoter and an upstream evolutionary conserved region (ECR) in mammals. Lowery JW, et al. PLoS One, 2013. PMID 23451274, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • regulatory region 366784

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_052600.1 

    Range
    101..1806
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    99000656..99002361
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version